C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VAMP (vesicle-associated membrane protein)-associated protein B and C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124164 VAPB 9606 + 20:58389122-58451101 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265619 VAPB-004 58389375-58446905 processed_transcript
  ENST00000395802 VAPB-002 58389313-58445552 protein_coding
  ENST00000463370 VAPB-003 58431033-58445552 processed_transcript
  ENST00000475243 VAPB-001 58389122-58451101 protein_coding
  ENST00000476395 VAPB-005 58438977-58445552 retained_intron
  ENST00000520497 VAPB-006 58389366-58444531 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265619ENST00000395802ENST00000463370ENST00000475243ENST00000520497
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265619 N/A N/A N/A N/A N/A N/A 0.615±0.00 1.704±0.00 N/A N/A N/A N/A N/A N/A
ENST00000395802 7.227±0.00 11.661±0.00 N/A N/A 8.131±0.00 10.271±0.00 9.074±0.00 8.453±5.90 10.051±0.00 4.645±0.00 13.075±0.00 13.724±6.77 8.896±0.87 6.697±0.08
ENST00000463370 N/A N/A N/A N/A N/A N/A N/A 1.915±0.00 N/A N/A N/A N/A 3.190±1.00 N/A
ENST00000475243 2.171±0.00 3.732±0.00 1.545±0.00 8.034±3.49 2.963±2.36 3.385±1.90 3.558±2.10 4.267±2.85 2.769±0.26 1.049±0.23 5.267±1.06 5.049±1.86 1.826±0.32 2.756±1.53
ENST00000520497 N/A N/A N/A N/A N/A 4.943±0.00 N/A N/A 6.814±0.00 N/A N/A 7.081±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IO CIL_0006IO_0002 CGP 20:58309696-58451101
CIL_000698 CIL_000698_0002 CGP 20:58389122-58515131

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005794 IDA Golgi apparatus
GO:0006665 TAS sphingolipid metabolic process
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006987 IDA activation of signaling protein activity involved in unfolded protein response
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane
GO:0019048 IDA modulation by virus of host morphology or physiology
GO:0019899 IPI enzyme binding
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030968 IMP endoplasmic reticulum unfolded protein response
GO:0042803 IPI protein homodimerization activity
GO:0044281 TAS small molecule metabolic process
GO:0045070 IMP positive regulation of viral genome replication
GO:0046982 IPI protein heterodimerization activity
GO:0048487 IDA beta-tubulin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070435 vapb vesicle-associated membrane protein, associated protein B and C protein_coding Danio_rerio
ENSMUSG00000054455 Vapb vesicle-associated membrane protein, associated protein B and C protein_coding Mus_musculus

Loading