C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: piwi-like RNA-mediated gene silencing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125207 PIWIL1 9606 + 12:130337887-130372637 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245255 PIWIL1-001 130337887-130372637 protein_coding
  ENST00000535956 PIWIL1-005 130339499-130346405 protein_coding
  ENST00000539400 PIWIL1-003 130338136-130346420 protein_coding
  ENST00000539995 PIWIL1-004 130339462-130346504 protein_coding
  ENST00000540672 PIWIL1-007 130345306-130349298 retained_intron
  ENST00000541480 PIWIL1-008 130366437-130371383 processed_transcript
  ENST00000542723 PIWIL1-006 130342231-130346571 protein_coding
  ENST00000546060 PIWIL1-002 130338108-130346548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000245255ENST00000540672
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000245255 0.027±0.00 0.053±0.00 0.022±0.01 0.046±0.00 0.021±0.00 0.028±0.00 0.046±0.00 0.030±0.00 0.015±0.00 0.012±0.00 53.653±28.28
ENST00000540672 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.023±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042V CIL_00042V_0001 CGP 12:130162459-130372637
CIL_00042U CIL_00042U_0001 CGP 12:130337887-130716281

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003727 IEA single-stranded RNA binding
GO:0003729 ISS mRNA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005844 IEA polysome
GO:0005845 IEA mRNA cap binding complex
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007286 ISS spermatid development
GO:0019901 IEA protein kinase binding
GO:0031047 ISS gene silencing by RNA
GO:0033391 ISS chromatoid body
GO:0034584 ISS piRNA binding
GO:0034587 IEA piRNA metabolic process
GO:0043186 ISS P granule
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041699 piwil1 piwi-like 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000029423 Piwil1 piwi-like RNA-mediated gene silencing 1 protein_coding Mus_musculus

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