C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAP1B, member of RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127314 RAP1B 9606 + 12:68610839-68671901 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250559 RAP1B-001 68610839-68671901 protein_coding
  ENST00000341355 RAP1B-018 68610908-68657191 protein_coding
  ENST00000378985 RAP1B-008 68610925-68657713 protein_coding
  ENST00000393436 RAP1B-002 68610858-68660522 protein_coding
  ENST00000422358 RAP1B-016 68610908-68650440 protein_coding
  ENST00000425247 RAP1B-013 68610899-68659283 protein_coding
  ENST00000450214 RAP1B-007 68610908-68660124 protein_coding
  ENST00000453560 RAP1B-023 68610925-68656364 protein_coding
  ENST00000460800 RAP1B-003 68610855-68650882 processed_transcript
  ENST00000463493 RAP1B-005 68610908-68659497 processed_transcript
  ENST00000485252 RAP1B-027 68610933-68652014 protein_coding
  ENST00000489473 RAP1B-017 68610908-68648757 protein_coding
  ENST00000501412 RAP1B-012 68610899-68650041 retained_intron
  ENST00000534899 RAP1B-024 68610925-68654190 protein_coding
  ENST00000535492 RAP1B-026 68610929-68657139 protein_coding
  ENST00000537460 RAP1B-006 68610908-68659401 protein_coding
  ENST00000538283 RAP1B-015 68610908-68654232 protein_coding
  ENST00000538877 RAP1B-029 68610938-68652028 protein_coding
  ENST00000538980 RAP1B-020 68610918-68657150 protein_coding
  ENST00000539091 RAP1B-010 68610929-68659647 protein_coding
  ENST00000540209 RAP1B-009 68610925-68659870 protein_coding
  ENST00000540781 RAP1B-025 68610929-68656398 protein_coding
  ENST00000541167 RAP1B-014 68610908-68654207 protein_coding
  ENST00000541216 RAP1B-004 68611025-68656637 protein_coding
  ENST00000541386 RAP1B-028 68610938-68648757 protein_coding
  ENST00000541968 RAP1B-033 68651682-68654219 retained_intron
  ENST00000542018 RAP1B-022 68610919-68654222 protein_coding
  ENST00000542145 RAP1B-011 68610929-68659754 protein_coding
  ENST00000543393 RAP1B-021 68610919-68659626 protein_coding
  ENST00000543697 RAP1B-030 68610939-68659441 protein_coding
  ENST00000544639 RAP1B-032 68650244-68656413 retained_intron
  ENST00000545270 RAP1B-019 68610913-68656348 protein_coding
  ENST00000545720 RAP1B-031 68610961-68654182 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250559ENST00000393436ENST00000450214ENST00000453560ENST00000537460ENST00000540781ENST00000541216ENST00000543393ENST00000543697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A N/A N/A
ENST00000393436 50.395±0.00 54.350±0.00 7.001±0.00 12.084±3.66 40.108±15.97 35.202±14.25 8.058±4.62 28.043±10.76 19.798±5.00 44.061±18.69 4.453±3.06 38.083±16.23 57.845±8.99 49.835±0.92
ENST00000450214 N/A N/A N/A N/A 14.137±0.00 N/A 2.354±0.00 6.742±0.00 3.339±0.00 22.784±0.00 4.062±0.00 N/A N/A N/A
ENST00000453560 N/A N/A N/A 9.145±0.00 N/A N/A 8.045±0.00 N/A N/A N/A N/A N/A 46.987±0.00 N/A
ENST00000537460 N/A N/A 4.580±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.549±0.00 N/A N/A N/A
ENST00000541216 N/A N/A 9.803±0.00 N/A N/A N/A N/A N/A N/A 25.680±0.00 N/A 20.790±0.00 N/A N/A
ENST00000543393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.506±0.00 N/A N/A N/A
ENST00000543697 32.760±0.00 N/A N/A 15.663±0.00 N/A 17.663±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA:IDA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005811 IDA lipid particle
GO:0005829 IDA cytosol
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006112 TAS energy reserve metabolic process
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007596 TAS blood coagulation
GO:0008283 IEA cell proliferation
GO:0015031 IEA protein transport
GO:0016020 IEA:TAS membrane
GO:0019003 IDA GDP binding
GO:0030168 TAS platelet activation
GO:0032403 IDA protein complex binding
GO:0032486 IMP Rap protein signal transduction
GO:0044281 TAS small molecule metabolic process
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis
GO:0050796 TAS regulation of insulin secretion
GO:0061028 IMP establishment of endothelial barrier
GO:0070062 IDA extracellular vesicular exosome
GO:0070374 IEA positive regulation of ERK1 and ERK2 cascade
GO:0071320 IDA cellular response to cAMP
GO:1901888 IMP regulation of cell junction assembly
GO:2000114 IMP regulation of establishment of cell polarity
GO:2000301 IEA negative regulation of synaptic vesicle exocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008867 rap1b RAS related protein 1b protein_coding Danio_rerio
ENSMUSG00000052681 Rap1b RAS related protein 1b protein_coding Mus_musculus

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