C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB3A interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127328 RAB3IP 9606 + 12:69738681-69823204 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000247833 RAB3IP-003 69738681-69817377 protein_coding
  ENST00000362025 RAB3IP-002 69739400-69815723 protein_coding
  ENST00000378809 RAB3IP-009 69739400-69815681 nonsense_mediated_decay
  ENST00000378815 RAB3IP-006 69738862-69796647 protein_coding
  ENST00000417413 RAB3IP-005 69738862-69815723 nonsense_mediated_decay
  ENST00000481897 RAB3IP-007 69812045-69817377 retained_intron
  ENST00000483530 RAB3IP-004 69738862-69815723 protein_coding
  ENST00000526994 RAB3IP-016 69795262-69815725 protein_coding
  ENST00000547055 RAB3IP-015 69756523-69785016 protein_coding
  ENST00000547591 RAB3IP-013 69755382-69795216 nonsense_mediated_decay
  ENST00000549760 RAB3IP-012 69739109-69756650 protein_coding
  ENST00000550536 RAB3IP-001 69739390-69823204 protein_coding
  ENST00000550647 RAB3IP-014 69756486-69812834 protein_coding
  ENST00000550847 RAB3IP-017 69796573-69815550 protein_coding
  ENST00000551641 RAB3IP-008 69778950-69817181 protein_coding
  ENST00000552199 RAB3IP-010 69739408-69815723 nonsense_mediated_decay
  ENST00000552610 RAB3IP-018 69812711-69815684 retained_intron
  ENST00000553099 RAB3IP-011 69778967-69817117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247833ENST00000378815ENST00000417413ENST00000483530ENST00000526994ENST00000547591ENST00000549760ENST00000550536ENST00000550847ENST00000551641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247833 N/A N/A N/A N/A 0.617±0.00 N/A N/A N/A N/A 2.669±0.00 N/A 0.478±0.00 N/A N/A
ENST00000378815 N/A N/A 5.513±0.00 N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A 1.785±0.00 N/A N/A
ENST00000417413 N/A N/A N/A 3.750±0.00 1.346±0.00 N/A N/A N/A 1.313±0.00 N/A N/A N/A N/A N/A
ENST00000483530 1.404±0.00 N/A N/A N/A N/A 1.574±0.00 1.737±0.00 N/A N/A 4.496±0.00 1.240±0.00 1.698±0.00 1.250±0.40 10.804±0.63
ENST00000526994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.924±0.00 N/A
ENST00000547591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.546±0.00 11.506±0.00 63.240±0.00
ENST00000549760 N/A N/A N/A N/A N/A N/A 8.952±0.00 1.775±0.00 N/A N/A 4.618±0.00 N/A N/A 71.224±0.00
ENST00000550536 N/A N/A 2.978±0.00 0.655±0.05 N/A N/A 0.676±0.00 3.956±0.00 0.301±0.04 0.699±0.00 0.077±0.00 0.698±0.51 0.327±0.12 1.610±0.00
ENST00000550847 N/A 2.874±0.00 N/A N/A N/A N/A N/A 2.048±0.00 4.211±0.00 N/A N/A N/A N/A 17.710±0.00
ENST00000551641 N/A N/A N/A N/A 0.324±0.00 N/A N/A 0.245±0.00 N/A N/A N/A 2.098±0.00 0.909±0.73 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0006612 IDA protein targeting to membrane
GO:0006893 TAS Golgi to plasma membrane transport
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0033365 IMP protein localization to organelle
GO:0036064 TAS ciliary basal body
GO:0042384 IMP cilium assembly
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010073 rab3ip RAB3A interacting protein (rabin3) protein_coding Danio_rerio

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