C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128394 APOBEC3F 9606 + 22:39040604-39053910 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308521 APOBEC3F-001 39040604-39053910 protein_coding
  ENST00000381565 APOBEC3F-002 39040857-39044423 protein_coding
  ENST00000476513 APOBEC3F-004 39045184-39052287 retained_intron
  ENST00000491387 APOBEC3F-003 39040604-39045192 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308521ENST00000381565ENST00000476513
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308521 0.685±0.00 1.993±0.00 0.274±0.00 0.264±0.00 0.444±0.00 N/A N/A 0.477±0.00 1.385±0.00 0.104±0.00 1.622±1.07 0.884±0.23 1.704±0.00
ENST00000381565 N/A N/A 0.580±0.00 N/A 1.753±0.00 0.413±0.00 N/A N/A N/A N/A N/A N/A 5.282±0.00
ENST00000476513 N/A N/A N/A N/A N/A 0.284±0.00 1.289±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0002230 IDA positive regulation of defense response to virus by host
GO:0003723 IDA RNA binding
GO:0003824 IEA catalytic activity
GO:0004126 IDA cytidine deaminase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IDA:IEA zinc ion binding
GO:0009972 IDA cytidine deamination
GO:0010529 IDA negative regulation of transposition
GO:0016553 IDA base conversion or substitution editing
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0030529 IDA ribonucleoprotein complex
GO:0030895 TAS apolipoprotein B mRNA editing enzyme complex
GO:0044822 IDA poly(A) RNA binding
GO:0045071 IDA negative regulation of viral genome replication
GO:0045087 IDA innate immune response
GO:0045869 IDA negative regulation of single stranded viral RNA replication via double stranded DNA intermediate
GO:0048525 IDA negative regulation of viral process
GO:0051607 IDA defense response to virus
GO:0070383 IDA DNA cytosine deamination
GO:0080111 IDA DNA demethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 protein_coding Mus_musculus

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