C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: podocalyxin-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128567 PODXL 9606 - 7:131500262-131558217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322985 PODXL-001 131504131-131556609 protein_coding
  ENST00000378555 PODXL-005 131504131-131556607 protein_coding
  ENST00000446198 PODXL-003 131500262-131556563 nonsense_mediated_decay
  ENST00000465001 PODXL-010 131511195-131558217 processed_transcript
  ENST00000482581 PODXL-006 131509069-131510898 retained_intron
  ENST00000484346 PODXL-009 131503950-131506105 retained_intron
  ENST00000487965 PODXL-007 131505889-131509402 retained_intron
  ENST00000490761 PODXL-008 131505876-131506927 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLiverLungOvaryENST00000322985ENST00000378555ENST00000446198ENST00000484346
Transcript ID Bladder Heart Kidney Liver Lung Ovary
ENST00000322985 N/A N/A N/A 0.998±0.00 N/A N/A
ENST00000378555 9.488±0.00 N/A 0.582±0.00 N/A N/A N/A
ENST00000446198 5.915±0.00 2.908±0.00 N/A 0.741±0.00 2.788±0.00 1.741±0.82
ENST00000484346 N/A N/A 0.954±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024O CIL_00024O_0002 CGP 7:131110096-131558217

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 IEA cell adhesion
GO:0007162 ISS negative regulation of cell adhesion
GO:0016324 ISS apical plasma membrane
GO:0016477 ISS cell migration
GO:0022408 ISS negative regulation of cell-cell adhesion
GO:0030027 IDA lamellipodium
GO:0030175 IDA filopodium
GO:0030335 IDA positive regulation of cell migration
GO:0031528 ISS microvillus membrane
GO:0032534 ISS regulation of microvillus assembly
GO:0033634 IDA positive regulation of cell-cell adhesion mediated by integrin
GO:0036057 ISS slit diaphragm
GO:0044297 IEA cell body
GO:0050900 IEA leukocyte migration
GO:0070062 IDA extracellular vesicular exosome
GO:0072015 ISS glomerular visceral epithelial cell development
GO:0072175 ISS epithelial tube formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031228 podxl podocalyxin-like protein_coding Danio_rerio
ENSMUSG00000025608 Podxl podocalyxin-like protein_coding Mus_musculus

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