C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: podocalyxin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378555 PODXL-005 ENSG00000128567 9606 - 7:131504131-131556607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyENST00000378555
Transcript ID Bladder Kidney
ENST00000378555 9.488±0.00 0.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024O CIL_00024O_0002 CGP 7:131110096-131558217

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 IEA cell adhesion
GO:0007162 ISS negative regulation of cell adhesion
GO:0016324 ISS apical plasma membrane
GO:0016477 ISS cell migration
GO:0022408 ISS negative regulation of cell-cell adhesion
GO:0030027 IDA lamellipodium
GO:0030175 IDA filopodium
GO:0030335 IDA positive regulation of cell migration
GO:0031528 ISS microvillus membrane
GO:0032534 ISS regulation of microvillus assembly
GO:0033634 IDA positive regulation of cell-cell adhesion mediated by integrin
GO:0036057 ISS slit diaphragm
GO:0044297 IEA cell body
GO:0050900 IEA leukocyte migration
GO:0070062 IDA extracellular vesicular exosome
GO:0072015 ISS glomerular visceral epithelial cell development
GO:0072175 ISS epithelial tube formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026698 Podxl-001 protein_coding Mus_musculus 0 529
ENSMUST00000136877 Podxl-002 processed_transcript Mus_musculus 0 294

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