C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: aldehyde dehydrogenase 1 family, member A2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128918 ALDH1A2 9606 - 15:57953424-58497866 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249750 ALDH1A2-001 57953424-58066418 protein_coding
  ENST00000347587 ALDH1A2-002 57953431-58065738 protein_coding
  ENST00000430119 ALDH1A2-015 57953820-58065668 nonsense_mediated_decay
  ENST00000537372 ALDH1A2-201 57953424-58065923 protein_coding
  ENST00000557967 ALDH1A2-024 58013906-58138825 protein_coding
  ENST00000558073 ALDH1A2-011 58013938-58279270 processed_transcript
  ENST00000558231 ALDH1A2-016 57955063-58279263 protein_coding
  ENST00000558239 ALDH1A2-003 58013858-58473913 protein_coding
  ENST00000558384 ALDH1A2-023 57953425-57955269 nonsense_mediated_decay
  ENST00000558504 ALDH1A2-012 58138447-58279227 processed_transcript
  ENST00000558524 ALDH1A2-013 58246183-58259051 processed_transcript
  ENST00000558595 ALDH1A2-019 58012089-58065711 processed_transcript
  ENST00000558603 ALDH1A2-007 58257448-58331379 processed_transcript
  ENST00000558946 ALDH1A2-005 58246183-58331630 processed_transcript
  ENST00000559266 ALDH1A2-020 57992783-58038582 processed_transcript
  ENST00000559297 ALDH1A2-008 58013986-58279321 processed_transcript
  ENST00000559517 ALDH1A2-017 57955167-58014101 protein_coding
  ENST00000559579 ALDH1A2-009 58214054-58279321 processed_transcript
  ENST00000559625 ALDH1A2-014 58241900-58246265 processed_transcript
  ENST00000560122 ALDH1A2-010 58014261-58279280 processed_transcript
  ENST00000560312 ALDH1A2-018 57953429-57964791 retained_intron
  ENST00000560863 ALDH1A2-004 58107417-58497866 processed_transcript
  ENST00000560923 ALDH1A2-022 57991424-57995139 processed_transcript
  ENST00000561070 ALDH1A2-021 57995090-58036723 protein_coding
  ENST00000561098 ALDH1A2-006 58257448-58331464 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249750ENST00000347587ENST00000430119ENST00000558231ENST00000558595ENST00000559517ENST00000560312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249750 N/A 0.395±0.00 0.440±0.00 N/A 1.217±0.00 N/A 0.582±0.13 N/A N/A 3.150±0.00 0.410±0.00 4.231±1.63 N/A N/A
ENST00000347587 1.899±0.00 0.807±0.00 N/A 0.311±0.00 0.995±0.00 2.035±0.00 N/A 1.919±0.00 N/A N/A N/A 1.326±1.07 4.837±2.85 26.097±15.09
ENST00000430119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.581±0.00 9.664±0.00
ENST00000558231 N/A N/A N/A N/A N/A N/A 0.870±0.00 N/A 0.830±0.00 N/A 0.768±0.00 N/A N/A N/A
ENST00000558595 N/A N/A 3.681±0.00 N/A 5.071±0.00 1.551±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559517 N/A N/A 4.192±0.00 0.431±0.00 2.321±0.00 N/A 1.685±0.00 N/A N/A N/A N/A 1.329±0.00 N/A N/A
ENST00000560312 N/A N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000501 CIL_000501_0002 CGP 15:57953424-58497866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001758 ISS retinal dehydrogenase activity
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0001936 IEA regulation of endothelial cell proliferation
GO:0002138 IEA retinoic acid biosynthetic process
GO:0003007 IEA heart morphogenesis
GO:0004028 ISS 3-chloroallyl aldehyde dehydrogenase activity
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0006776 NAS vitamin A metabolic process
GO:0007494 IEA midgut development
GO:0008152 IEA metabolic process
GO:0008284 IEA positive regulation of cell proliferation
GO:0008285 IDA negative regulation of cell proliferation
GO:0009855 IEA determination of bilateral symmetry
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010628 IEA positive regulation of gene expression
GO:0014032 IEA neural crest cell development
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0016491 IEA oxidoreductase activity
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016918 ISS retinal binding
GO:0021915 IMP neural tube development
GO:0021983 IEA pituitary gland development
GO:0030182 IEA neuron differentiation
GO:0030324 IEA lung development
GO:0030326 IEA embryonic limb morphogenesis
GO:0030900 IEA forebrain development
GO:0030902 IEA hindbrain development
GO:0031016 IEA pancreas development
GO:0031076 IEA embryonic camera-type eye development
GO:0032355 IEA response to estradiol
GO:0033189 IEA response to vitamin A
GO:0034097 IDA response to cytokine
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035799 IEA ureter maturation
GO:0042572 IEA retinol metabolic process
GO:0042573 ISS retinoic acid metabolic process
GO:0042574 IEA retinal metabolic process
GO:0042904 IEA 9-cis-retinoic acid biosynthetic process
GO:0043010 IEA camera-type eye development
GO:0043065 IEA positive regulation of apoptotic process
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048566 IEA embryonic digestive tract development
GO:0048738 IEA cardiac muscle tissue development
GO:0055114 IEA oxidation-reduction process
GO:0060324 IEA face development
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053493 aldh1a2 aldehyde dehydrogenase 1 family, member A2 protein_coding Danio_rerio
ENSMUSG00000013584 Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 protein_coding Mus_musculus

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