C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coatomer protein complex, subunit beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129083 COPB1 9606 - 11:14443440-14500027 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249923 COPB1-001 14457506-14499852 protein_coding
  ENST00000439561 COPB1-002 14457550-14499895 protein_coding
  ENST00000525214 COPB1-009 14451835-14461222 processed_transcript
  ENST00000526191 COPB1-011 14474010-14475875 processed_transcript
  ENST00000526527 COPB1-008 14460016-14461341 processed_transcript
  ENST00000529210 COPB1-005 14494317-14499846 processed_transcript
  ENST00000529866 COPB1-012 14493721-14499862 protein_coding
  ENST00000532088 COPB1-010 14443440-14457886 processed_transcript
  ENST00000533096 COPB1-013 14494260-14499666 processed_transcript
  ENST00000533533 COPB1-006 14494310-14499810 processed_transcript
  ENST00000534234 COPB1-003 14476917-14499811 protein_coding
  ENST00000534771 COPB1-004 14493737-14500027 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249923ENST00000439561ENST00000534234
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249923 4.969±0.00 6.152±0.00 N/A N/A N/A 9.046±0.00 2.030±0.00 8.123±2.34 N/A 2.344±0.00 N/A 6.981±0.00 4.885±0.00 5.874±0.48
ENST00000439561 18.175±0.00 14.661±0.00 2.108±0.00 7.321±3.87 9.354±3.18 11.283±0.16 8.053±5.29 24.689±0.00 9.215±4.28 15.117±5.74 9.081±0.00 19.130±4.69 17.380±3.25 14.733±1.18
ENST00000534234 N/A N/A N/A N/A N/A N/A N/A N/A 9.457±0.00 7.057±0.00 N/A 9.905±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PN CIL_0003PN_0001 CGP 11:14277926-14500027
CIL_0003PO CIL_0003PO_0001 CGP 11:14443440-14520344

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005198 IEA structural molecule activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005798 TAS Golgi-associated vesicle
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 ISS intra-Golgi vesicle-mediated transport
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 ISS:IEA COPI vesicle coat
GO:0030137 IEA COPI-coated vesicle
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056557 copb1 coatomer protein complex, subunit beta 1 protein_coding Danio_rerio
ENSMUSG00000030754 Copb1 coatomer protein complex, subunit beta 1 protein_coding Mus_musculus

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