C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439561 COPB1-002 ENSG00000129083 9606 - 11:14457550-14499895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000439561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000439561 18.175±0.00 14.661±0.00 2.108±0.00 7.321±3.87 9.354±3.18 11.283±0.16 8.053±5.29 24.689±0.00 9.215±4.28 15.117±5.74 9.081±0.00 19.130±4.69 17.380±3.25 14.733±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PN CIL_0003PN_0001 CGP 11:14277926-14500027
CIL_0003PO CIL_0003PO_0001 CGP 11:14443440-14520344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005198 IEA structural molecule activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005798 TAS Golgi-associated vesicle
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 ISS intra-Golgi vesicle-mediated transport
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 ISS:IEA COPI vesicle coat
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033012 Copb1-201 protein_coding Mus_musculus 0 4237

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