C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thioredoxin domain containing 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129235 TXNDC17 9606 + 17:6640758-6644541 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250101 TXNDC17-001 6640758-6644541 protein_coding
  ENST00000570330 TXNDC17-010 6641016-6643114 protein_coding
  ENST00000571029 TXNDC17-009 6641658-6643117 processed_transcript
  ENST00000571957 TXNDC17-005 6641027-6642357 processed_transcript
  ENST00000573792 TXNDC17-008 6641466-6643120 processed_transcript
  ENST00000574429 TXNDC17-002 6641024-6643123 retained_intron
  ENST00000574734 TXNDC17-004 6641034-6643116 nonsense_mediated_decay
  ENST00000574838 TXNDC17-006 6641043-6643429 protein_coding
  ENST00000576020 TXNDC17-003 6640985-6643067 processed_transcript
  ENST00000577146 TXNDC17-007 6641308-6643119 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000250101ENST00000570330ENST00000571957ENST00000574734ENST00000574838ENST00000576020
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000250101 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.471±0.00 N/A N/A
ENST00000570330 9.577±0.00 14.351±0.00 N/A 14.499±0.00 12.372±0.00 N/A 21.739±0.00 39.620±0.00 4.639±0.00 27.078±1.11 24.764±4.52 29.971±0.00
ENST00000571957 9.887±0.00 19.010±0.00 N/A 16.240±0.00 20.353±0.00 15.492±0.00 28.165±8.02 48.624±0.00 15.671±0.00 30.208±0.00 39.272±2.35 N/A
ENST00000574734 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.534±0.00 N/A N/A
ENST00000574838 N/A N/A 6.412±0.00 N/A N/A N/A N/A N/A 3.291±0.00 N/A N/A N/A
ENST00000576020 N/A N/A N/A N/A N/A 11.738±0.00 N/A N/A N/A N/A 20.466±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SQ CIL_0006SQ_0002 CGP 17:6451264-6640927
CIL_0001B4 CIL_0001B4_0001 CGP 17:6578148-6644541
CIL_0000HF CIL_0000HF_0001 CGP 17:6640758-6651634

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004601 IDA peroxidase activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0009055 IDA electron carrier activity
GO:0033209 IMP tumor necrosis factor-mediated signaling pathway
GO:0047134 IDA protein-disulfide reductase activity
GO:0055114 IDA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058079 txndc17 thioredoxin domain containing 17 protein_coding Danio_rerio
ENSMUSG00000020803 Txndc17 thioredoxin domain containing 17 protein_coding Mus_musculus

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