C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 27 (fatty acid transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130304 SLC27A1 9606 + 19:17468769-17506168 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252595 SLC27A1-001 17470444-17506168 protein_coding
  ENST00000593701 SLC27A1-008 17488760-17500555 retained_intron
  ENST00000594962 SLC27A1-007 17495415-17506168 retained_intron
  ENST00000598424 SLC27A1-002 17470489-17504986 protein_coding
  ENST00000598848 SLC27A1-009 17499870-17504601 processed_transcript
  ENST00000599380 SLC27A1-004 17470528-17499398 nonsense_mediated_decay
  ENST00000599965 SLC27A1-010 17500366-17504900 protein_coding
  ENST00000600277 SLC27A1-003 17468769-17497314 nonsense_mediated_decay
  ENST00000600297 SLC27A1-005 17470538-17489065 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252595ENST00000593701ENST00000599380ENST00000600277
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252595 13.632±0.00 9.899±0.00 10.319±0.00 20.860±0.00 7.037±0.00 2.336±0.00 3.466±0.00 1.130±0.00 2.480±1.69 N/A 10.899±8.06 6.765±2.15 7.339±1.36
ENST00000593701 N/A N/A N/A N/A N/A 4.201±0.00 N/A N/A N/A N/A 4.973±0.00 N/A N/A
ENST00000599380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.160±0.00 1.552±0.00 N/A
ENST00000600277 N/A N/A N/A N/A N/A N/A 0.876±0.00 1.419±0.00 N/A 2.318±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051F CIL_00051F_0001 CGP 19:17455425-17506168
CIL_000769 CIL_000769_0001 CGP 19:17468769-17521288

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001579 IEA medium-chain fatty acid transport
GO:0003824 IEA catalytic activity
GO:0005783 IEA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006631 IEA fatty acid metabolic process
GO:0006646 IMP phosphatidylethanolamine biosynthetic process
GO:0006654 IMP phosphatidic acid biosynthetic process
GO:0006655 IMP phosphatidylglycerol biosynthetic process
GO:0006656 IMP phosphatidylcholine biosynthetic process
GO:0006659 IMP phosphatidylserine biosynthetic process
GO:0006661 IMP phosphatidylinositol biosynthetic process
GO:0008152 IEA metabolic process
GO:0009409 IEA response to cold
GO:0015245 IEA fatty acid transporter activity
GO:0015908 IEA fatty acid transport
GO:0015909 TAS long-chain fatty acid transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031652 IEA positive regulation of heat generation
GO:0031957 IEA very long-chain fatty acid-CoA ligase activity
GO:0032049 IMP cardiolipin biosynthetic process
GO:0032868 IEA response to insulin
GO:0033211 IEA adiponectin-activated signaling pathway
GO:0042803 IEA protein homodimerization activity
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS transmembrane transport
GO:0071072 IMP negative regulation of phospholipid biosynthetic process
GO:0071902 IEA positive regulation of protein serine/threonine kinase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006240 slc27a1a solute carrier family 27 (fatty acid transporter), member 1a protein_coding Danio_rerio
ENSDARG00000038352 slc27a1b solute carrier family 27 (fatty acid transporter), member 1b protein_coding Danio_rerio
ENSMUSG00000031808 Slc27a1 solute carrier family 27 (fatty acid transporter), member 1 protein_coding Mus_musculus

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