C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130638 ATXN10 9606 + 22:45671798-45845307 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252934 ATXN10-001 45671799-45845307 protein_coding
  ENST00000381061 ATXN10-201 45671798-45845304 protein_coding
  ENST00000402380 ATXN10-009 45793596-45843797 protein_coding
  ENST00000435026 ATXN10-010 45729441-45823277 protein_coding
  ENST00000451241 ATXN10-007 45738739-45811794 protein_coding
  ENST00000464482 ATXN10-008 45740510-45744817 processed_transcript
  ENST00000470722 ATXN10-003 45689466-45700322 processed_transcript
  ENST00000476998 ATXN10-004 45703973-45738839 processed_transcript
  ENST00000483549 ATXN10-005 45718423-45740800 retained_intron
  ENST00000493643 ATXN10-006 45738474-45843671 processed_transcript
  ENST00000498009 ATXN10-002 45672188-45718464 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252934ENST00000381061ENST00000402380ENST00000476998ENST00000483549ENST00000493643ENST00000498009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252934 2.378±0.00 3.783±0.00 3.096±0.00 11.163±2.07 2.742±1.05 3.863±1.06 2.970±0.81 5.157±0.79 4.508±1.55 5.836±0.85 3.002±0.03 13.554±5.76 13.167±3.77 8.997±0.34
ENST00000381061 N/A N/A N/A 13.750±0.00 2.121±0.00 1.397±0.00 N/A 9.521±0.00 N/A 3.982±0.00 1.669±0.00 N/A N/A 11.985±0.00
ENST00000402380 N/A N/A N/A N/A N/A N/A N/A 34.464±0.00 N/A N/A 5.512±0.00 N/A N/A 38.853±0.00
ENST00000476998 N/A N/A N/A N/A N/A N/A 15.595±0.00 N/A N/A N/A N/A 98.890±0.00 88.533±0.00 139.806±0.00
ENST00000483549 N/A N/A N/A N/A N/A 5.687±0.00 3.326±0.00 N/A 8.536±0.00 N/A N/A 14.652±0.00 N/A N/A
ENST00000493643 12.765±0.00 23.285±0.00 14.177±0.00 70.772±15.95 15.157±0.59 14.676±2.43 5.437±0.00 25.611±0.00 11.979±0.00 18.916±1.59 11.299±2.54 55.458±49.23 23.428±3.97 62.671±0.00
ENST00000498009 9.991±0.00 19.052±0.00 N/A N/A 12.021±0.00 13.415±0.00 19.373±0.00 26.309±0.00 14.599±0.00 16.821±0.00 9.912±0.00 21.368±0.00 17.867±1.74 37.621±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054E CIL_00054E_0001 CGP 22:45502238-45845307
CIL_0008KW CIL_0008KW_0001 VISTA 22:45545035-46146420

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0007399 IMP nervous system development
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0030425 IDA dendrite
GO:0031175 IDA neuron projection development
GO:0042802 IEA identical protein binding
GO:0043025 IDA neuronal cell body
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008439 atxn10 ataxin 10 protein_coding Danio_rerio
ENSMUSG00000016541 Atxn10 ataxin 10 protein_coding Mus_musculus

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