C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal PAS domain protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130751 NPAS1 9606 + 19:47019820-47045775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000439365 NPAS1-004 47035329-47045758 protein_coding
  ENST00000449844 NPAS1-003 47020886-47045759 protein_coding
  ENST00000594257 NPAS1-008 47035350-47042877 nonsense_mediated_decay
  ENST00000594670 NPAS1-006 47035348-47041125 protein_coding
  ENST00000600352 NPAS1-007 47035889-47040733 retained_intron
  ENST00000601169 NPAS1-005 47035332-47040758 retained_intron
  ENST00000602189 NPAS1-002 47019849-47045727 protein_coding
  ENST00000602212 NPAS1-001 47019820-47045775 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000439365ENST00000594257ENST00000594670ENST00000600352ENST00000601169ENST00000602189ENST00000602212
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000439365 0.028±0.00 0.390±0.00 0.883±0.75 0.444±0.00 0.128±0.00 N/A N/A 0.088±0.00 N/A 0.158±0.11 0.468±0.37 0.214±0.04
ENST00000594257 N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A 0.389±0.01 0.198±0.00
ENST00000594670 N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A N/A 1.486±0.00 N/A 0.113±0.00
ENST00000600352 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.995±0.00 N/A N/A
ENST00000601169 N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A 0.134±0.00 0.155±0.00 0.332±0.00 N/A
ENST00000602189 N/A N/A 0.268±0.00 N/A N/A N/A N/A N/A N/A 0.240±0.00 0.088±0.00 N/A
ENST00000602212 N/A 0.677±0.00 0.814±0.00 0.072±0.00 N/A N/A 0.283±0.00 N/A N/A N/A N/A 0.192±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0001 VISTA 19:46806794-47408636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001964 IEA startle response
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007417 TAS central nervous system development
GO:0042711 IEA maternal behavior
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015876 npas3b neuronal PAS domain protein 3b protein_coding Danio_rerio
ENSMUSG00000001988 Npas1 neuronal PAS domain protein 1 protein_coding Mus_musculus

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