C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439365 NPAS1-004 ENSG00000130751 9606 + 19:47035329-47045758 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverOvaryPlacentaTestisENST00000439365
Transcript ID Adipose Adrenal Brain Breast Colon Liver Ovary Placenta Testis
ENST00000439365 0.028±0.00 0.390±0.00 0.883±0.75 0.444±0.00 0.128±0.00 0.088±0.00 0.158±0.11 0.468±0.37 0.214±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0001 VISTA 19:46806794-47408636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007417 TAS central nervous system development
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002053 Npas1-201 protein_coding Mus_musculus 0 523

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