C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: low density lipoprotein receptor-related protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130881 LRP3 9606 + 19:33177603-33208867 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253193 LRP3-001 33194584-33208867 protein_coding
  ENST00000590275 LRP3-002 33196736-33205534 retained_intron
  ENST00000590278 LRP3-003 33203870-33207639 retained_intron
  ENST00000592484 LRP3-005 33177603-33205291 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253193ENST00000590275ENST00000590278ENST00000592484
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253193 7.332±0.00 8.009±0.00 10.373±6.00 22.594±0.00 5.013±4.89 3.402±2.85 3.616±1.84 5.921±4.88 1.224±1.11 3.160±1.08 15.208±13.65 4.889±0.89 6.256±4.11
ENST00000590275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.169±0.00
ENST00000590278 3.108±0.00 N/A N/A N/A N/A N/A N/A 0.855±0.00 N/A N/A 7.217±0.00 0.795±0.00 1.009±0.00
ENST00000592484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.499±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NJ CIL_0004NJ_0002 CGP 19:33177603-33225850

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005905 IEA coated pit
GO:0006898 TAS receptor-mediated endocytosis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008485 LRP3 low density lipoprotein receptor-related protein 3 protein_coding Danio_rerio
ENSMUSG00000001802 Lrp3 low density lipoprotein receptor-related protein 3 protein_coding Mus_musculus

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