C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11 family interacting protein 4 (class II)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131242 RAB11FIP4 9606 + 17:31391624-31538217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000394744 RAB11FIP4-002 31488000-31531849 protein_coding
  ENST00000578148 RAB11FIP4-011 31530972-31531852 processed_transcript
  ENST00000578694 RAB11FIP4-009 31488192-31521184 nonsense_mediated_decay
  ENST00000579589 RAB11FIP4-008 31488118-31517708 nonsense_mediated_decay
  ENST00000579908 RAB11FIP4-012 31431813-31448495 processed_transcript
  ENST00000581280 RAB11FIP4-005 31391935-31392658 processed_transcript
  ENST00000581460 RAB11FIP4-010 31521866-31527893 retained_intron
  ENST00000582009 RAB11FIP4-006 31431559-31521223 protein_coding
  ENST00000583755 RAB11FIP4-007 31488108-31525116 protein_coding
  ENST00000585058 RAB11FIP4-003 31520906-31527593 retained_intron
  ENST00000621161 RAB11FIP4-001 31391624-31538217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394744ENST00000583755ENST00000585058ENST00000621161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394744 0.215±0.00 3.380±0.00 1.549±0.00 14.051±0.00 0.554±0.00 2.238±0.00 0.731±0.31 2.904±1.55 0.698±0.00 3.145±1.17 0.271±0.13 5.921±5.47 11.028±6.30 21.245±6.41
ENST00000583755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.664±0.00 24.387±0.00 34.282±0.00 107.495±0.00
ENST00000585058 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621161 N/A N/A N/A 10.550±5.07 N/A 0.167±0.00 N/A N/A 0.064±0.00 N/A 0.058±0.00 3.881±0.00 5.086±0.00 0.562±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VQ CIL_0000VQ_0001 CGP 17:31317560-31538217

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005768 IDA endosome
GO:0006810 IEA transport
GO:0016032 IEA viral process
GO:0017137 IPI Rab GTPase binding
GO:0030139 IDA endocytic vesicle
GO:0030306 IPI ADP-ribosylation factor binding
GO:0030496 IDA midbody
GO:0032154 IDA cleavage furrow
GO:0042803 IDA protein homodimerization activity
GO:0055038 IDA recycling endosome membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053855 rab11fip4a RAB11 family interacting protein 4 (class II) a protein_coding Danio_rerio
ENSDARG00000070319 rab11fip4b RAB11 family interacting protein 4 (class II) b protein_coding Danio_rerio
ENSMUSG00000017639 Rab11fip4 RAB11 family interacting protein 4 (class II) protein_coding Mus_musculus

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