C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126860-ENSG00000131242 CGP 9606 17:31317560-31538217
GeneTranscriptPositionBiotype
ENSG00000131242 (RAB11FIP4)
RAB11 family interacting protein 4 (class II) 		ENST00000394744 (RAB11FIP4-002) 31488000-31531849 protein_coding
ENST00000578148 (RAB11FIP4-011) 31530972-31531852 processed_transcript
ENST00000578694 (RAB11FIP4-009) 31488192-31521184 nonsense_mediated_decay
ENST00000579589 (RAB11FIP4-008) 31488118-31517708 nonsense_mediated_decay
ENST00000579908 (RAB11FIP4-012) 31431813-31448495 processed_transcript
ENST00000581280 (RAB11FIP4-005) 31391935-31392658 processed_transcript
ENST00000581460 (RAB11FIP4-010) 31521866-31527893 retained_intron
ENST00000582009 (RAB11FIP4-006) 31431559-31521223 protein_coding
ENST00000583755 (RAB11FIP4-007) 31488108-31525116 protein_coding
ENST00000585058 (RAB11FIP4-003) 31520906-31527593 retained_intron
ENST00000621161 (RAB11FIP4-001) 31391624-31538217 protein_coding
ENSG00000196712 (NF1)
neurofibromin 1 		ENST00000356175 (NF1-002) 31094927-31377677 protein_coding
ENST00000358273 (NF1-001) 31094927-31377677 protein_coding
ENST00000422121 (NF1-020) 31378891-31382106 nonsense_mediated_decay
ENST00000431387 (NF1-010) 31094977-31222764 protein_coding
ENST00000456735 (NF1-003) 31200536-31374433 protein_coding
ENST00000466819 (NF1-007) 31233030-31261794 nonsense_mediated_decay
ENST00000468273 (NF1-013) 31358548-31360956 protein_coding
ENST00000471572 (NF1-014) 31337817-31381887 nonsense_mediated_decay
ENST00000479536 (NF1-012) 31330329-31336873 nonsense_mediated_decay
ENST00000479614 (NF1-008) 31233030-31261794 nonsense_mediated_decay
ENST00000487476 (NF1-004) 31094927-31219359 retained_intron
ENST00000488981 (NF1-022) 31380141-31382116 processed_transcript
ENST00000489712 (NF1-023) 31128458-31169964 protein_coding
ENST00000490416 (NF1-011) 31159065-31183027 retained_intron
ENST00000493220 (NF1-005) 31225083-31331904 retained_intron
ENST00000495910 (NF1-006) 31156041-31254292 nonsense_mediated_decay
ENST00000498569 (NF1-021) 31378648-31382116 processed_transcript
ENST00000577967 (NF1-016) 31355804-31361602 retained_intron
ENST00000579081 (NF1-009) 31095208-31374287 nonsense_mediated_decay
ENST00000581113 (NF1-017) 31318413-31336473 processed_transcript
ENST00000581790 (NF1-015) 31337817-31360597 nonsense_mediated_decay
ENST00000582892 (NF1-019) 31340280-31349150 retained_intron
ENST00000584328 (NF1-018) 31337763-31343098 retained_intron
ENSG00000239595 (RN7SL79P)
RNA, 7SL, cytoplasmic 79, pseudogene 		ENST00000484117 (RN7SL79P-201) 31465543-31465832 misc_RNA
ENSG00000263535 (AK4P1)
adenylate kinase 4 pseudogene 1 		ENST00000581275 (AK4P1-001) 31345521-31346187 processed_pseudogene
ENSG00000264862 (RN7SL45P)
RNA, 7SL, cytoplasmic 45, pseudogene 		ENST00000578050 (RN7SL45P-201) 31518432-31518729 misc_RNA
ENSG00000276244 (AC135724.1)
 ENST00000611024 (AC135724.1-201) 31427203-31427296 miRNA
ENSG00000278977 (RP1-41C23.2)
 ENST00000624452 (RP1-41C23.2-001) 31533171-31533938 TEC
CIL_0000VQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078771-ENSMUSG00000017639 CGP 10090 11:79526560-79698023
GeneTranscriptPositionBiotype
ENSMUSG00000017639 (Rab11fip4)
RAB11 family interacting protein 4 (class II) 		ENSMUST00000017783 (Rab11fip4-001) 79591212-79698023 protein_coding
ENSMUST00000155381 (Rab11fip4-002) 79660562-79683498 protein_coding
ENSMUSG00000020716 (Nf1)
neurofibromatosis 1 		ENSMUST00000071325 (Nf1-001) 79339825-79581612 protein_coding
ENSMUST00000108251 (Nf1-003) 79339792-79578942 protein_coding
ENSMUST00000122917 (Nf1-002) 79448153-79473412 processed_transcript
ENSMUST00000130979 (Nf1-008) 79448153-79473412 processed_transcript
ENSMUST00000131800 (Nf1-004) 79339887-79430788 retained_intron
ENSMUST00000137997 (Nf1-006) 79546308-79580048 protein_coding
ENSMUST00000145839 (Nf1-005) 79339693-79345186 processed_transcript
ENSMUST00000146699 (Nf1-007) 79536908-79570115 retained_intron
ENSMUSG00000070354 (Gm21975)
predicted gene 21975 		ENSMUST00000093983 (Gm21975-001) 79513385-79530559 nonsense_mediated_decay
ENSMUST00000170422 (Gm21975-201) 79513385-79530589 protein_coding
ENSMUSG00000077574 (Gm24887)
predicted gene, 24887 		ENSMUST00000104386 (Gm24887-201) 79639021-79639128 snRNA
ENSMUSG00000078771 (Evi2a)
ecotropic viral integration site 2a 		ENSMUST00000103236 (Evi2a-001) 79526560-79530588 protein_coding
ENSMUST00000133148 (Evi2a-002) 79528068-79530609 processed_transcript
ENSMUST00000146611 (Evi2a-003) 79527685-79528146 protein_coding
ENSMUST00000154415 (Evi2a-004) 79526957-79527775 protein_coding
ENSMUST00000170799 (Evi2a-201) 79526568-79530609 protein_coding
ENSMUSG00000086569 (Rab11fip4os2)
RAB11 family interacting protein 4 (class II), opposite strand 2 		ENSMUST00000123067 (Rab11fip4os2-002) 79673867-79675128 antisense
ENSMUST00000132921 (Rab11fip4os2-001) 79670372-79675083 antisense
ENSMUSG00000087434 (Rab11fip4os1)
RAB11 family interacting protein 4 (class II), opposite strand 1 		ENSMUST00000145652 (Rab11fip4os1-001) 79607079-79623163 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VQ_0001ENSG00000131242ENST00000394744ENST00000583755ENST00000585058ENST00000621161ENSG00000196712ENST00000356175ENST00000358273ENST00000456735ENST00000495910ENST00000579081ENSG00000239595ENST00000484117ENSG00000263535ENST00000581275ENSG00000264862ENST00000578050ENSG00000276244ENST00000611024ENSG00000278977ENST00000624452CIL_0000VQ_0002ENSMUSG00000017639ENSMUST00000017783ENSMUST00000155381ENSMUSG00000020716ENSMUST00000071325ENSMUST00000108251ENSMUST00000137997ENSMUST00000145839ENSMUSG00000070354ENSMUST00000093983ENSMUST00000170422ENSMUSG00000077574ENSMUST00000104386ENSMUSG00000078771ENSMUST00000103236ENSMUST00000133148ENSMUST00000154415ENSMUST00000170799ENSMUSG00000086569ENSMUST00000123067ENSMUST00000132921ENSMUSG00000087434ENSMUST00000145652
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131242 ENST00000394744 0.215±0.00 3.380±0.00 1.549±0.00 14.051±0.00 0.554±0.00 2.238±0.00 0.731±0.31 2.904±1.55 0.698±0.00 3.145±1.17 0.271±0.13 5.921±5.47 11.028±6.30 21.245±6.41
ENST00000578148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.664±0.00 24.387±0.00 34.282±0.00 107.495±0.00
ENST00000585058 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621161 N/A N/A N/A 10.550±5.07 N/A 0.167±0.00 N/A N/A 0.064±0.00 N/A 0.058±0.00 3.881±0.00 5.086±0.00 0.562±0.00
ENSG00000196712 ENST00000356175 1.340±0.00 N/A N/A 5.811±0.35 N/A 1.371±0.00 N/A N/A 0.630±0.00 2.346±0.00 N/A 1.076±0.00 1.176±0.00 2.147±0.00
ENST00000358273 2.277±0.00 3.127±0.00 2.670±0.00 N/A 3.536±0.00 2.030±0.80 1.957±0.00 3.357±1.13 4.292±0.00 2.998±1.23 N/A 3.000±2.13 1.706±0.12 2.575±0.00
ENST00000422121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456735 N/A N/A 2.114±0.00 5.367±0.00 2.257±0.00 2.331±0.00 2.885±0.00 N/A 5.015±0.00 2.832±0.00 1.252±0.38 3.944±0.00 N/A 3.387±0.00
ENST00000466819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495910 N/A N/A N/A N/A 2.418±0.00 2.254±0.00 N/A N/A N/A N/A N/A 3.530±0.00 N/A N/A
ENST00000498569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579081 N/A N/A N/A N/A N/A 2.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239595 ENST00000484117 N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263535 ENST00000581275 N/A N/A 3.179±0.00 1.329±0.00 0.173±0.00 N/A 1.202±0.00 4.761±0.00 2.157±0.00 0.167±0.00 N/A 0.662±0.74 0.077±0.00 N/A
ENSG00000264862 ENST00000578050 N/A 0.758±0.00 N/A 0.139±0.00 0.199±0.00 N/A 0.118±0.00 0.456±0.00 N/A 0.125±0.00 N/A 0.240±0.00 N/A 0.406±0.00
ENSG00000276244 ENST00000611024 N/A 1.847±0.00 N/A N/A 0.395±0.00 1.082±0.00 0.732±0.00 N/A N/A N/A N/A N/A N/A 1.044±0.00
ENSG00000278977 ENST00000624452 N/A N/A 3.253±0.00 26.689±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017639 ENSMUST00000017783 0.401±0.16 0.236±0.09 0.178±0.11 23.649±8.70 0.677±0.22 7.533±0.00 0.147±0.10 7.502±4.06 0.766±0.57 N/A 0.033±0.02 0.928±0.25 5.521±2.26 1.884±0.68
ENSMUST00000155381 N/A 0.589±0.21 N/A N/A N/A 6.751±0.00 N/A N/A 1.849±0.00 N/A N/A 5.370±0.00 N/A N/A
ENSMUSG00000020716 ENSMUST00000071325 3.265±1.44 4.576±2.23 3.893±0.58 8.870±1.09 3.796±1.38 3.403±1.68 1.276±0.72 2.545±0.50 0.994±0.45 4.996±1.99 0.191±0.00 3.536±2.11 1.031±0.12 4.987±1.74
ENSMUST00000108251 N/A 2.053±0.16 N/A N/A 0.897±0.00 2.042±0.00 0.396±0.00 N/A N/A 2.061±0.00 N/A 2.812±1.39 0.206±0.00 3.156±0.38
ENSMUST00000122917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137997 4.959±0.72 N/A 4.991±0.38 8.692±1.75 2.203±0.06 1.399±0.00 1.761±0.18 1.763±0.39 1.202±0.45 4.099±0.89 0.784±0.14 3.565±0.89 0.697±0.43 4.279±1.56
ENSMUST00000145839 N/A 2.823±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070354 ENSMUST00000093983 N/A 0.562±0.14 N/A 0.235±0.07 N/A 0.903±0.00 N/A 0.288±0.00 0.244±0.01 1.112±0.00 0.094±0.00 0.683±0.19 0.023±0.00 0.076±0.06
ENSMUST00000170422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00
ENSMUSG00000077574 ENSMUST00000104386 N/A N/A N/A N/A N/A N/A 1676.880±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078771 ENSMUST00000103236 8.124±1.49 3.301±0.86 6.288±0.50 2.573±2.47 20.832±1.19 3.542±1.07 1.903±0.45 2.376±0.58 2.719±1.88 9.309±1.53 1.392±0.25 4.627±1.55 0.765±0.82 0.401±0.23
ENSMUST00000133148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENSMUST00000146611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154415 N/A N/A N/A 11.302±0.00 N/A 3.111±0.26 N/A N/A 0.721±0.00 N/A N/A 8.214±0.00 N/A N/A
ENSMUST00000170799 2.228±0.00 0.781±0.00 N/A 0.310±0.06 N/A 0.661±0.03 N/A 0.453±0.08 N/A N/A 0.159±0.00 1.290±0.39 0.150±0.02 0.405±0.22
ENSMUSG00000086569 ENSMUST00000123067 N/A N/A N/A 0.057±0.00 0.139±0.06 0.268±0.16 0.090±0.00 0.049±0.00 0.114±0.06 N/A N/A 0.240±0.05 0.094±0.00 5.434±1.22
ENSMUST00000132921 N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.605±0.03
ENSMUSG00000087434 ENSMUST00000145652 N/A N/A N/A 0.040±0.01 N/A 0.027±0.00 N/A 0.030±0.00 0.002±0.00 N/A N/A 0.149±0.06 0.017±0.01 0.015±0.00

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