C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin sulfate synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131873 CHSY1 9606 - 15:101175723-101251932 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254190 CHSY1-001 101175723-101251932 protein_coding
  ENST00000543813 CHSY1-002 101177101-101188061 processed_transcript
  ENST00000559384 CHSY1-006 101235509-101242617 processed_transcript
  ENST00000560766 CHSY1-005 101178577-101188025 processed_transcript
  ENST00000561143 CHSY1-004 101187541-101189567 processed_transcript
  ENST00000561414 CHSY1-003 101178602-101187870 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254190ENST00000543813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254190 13.669±0.00 15.857±0.00 1.769±0.00 5.477±3.24 6.642±3.11 5.256±2.23 3.290±2.14 3.835±3.08 1.709±0.52 18.898±13.09 1.571±1.02 12.143±4.17 15.751±7.65 9.519±5.78
ENST00000543813 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.180±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002063 IEA chondrocyte development
GO:0005576 IDA extracellular region
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0009954 IEA proximal/distal pattern formation
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0030279 IMP negative regulation of ossification
GO:0031667 IEA response to nutrient levels
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding
GO:0047238 IDA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
GO:0051216 IEA cartilage development
GO:0051923 IEA sulfation
GO:0060349 IEA bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079027 chsy1 chondroitin sulfate synthase 1 protein_coding Danio_rerio
ENSMUSG00000032640 Chsy1 chondroitin sulfate synthase 1 protein_coding Mus_musculus

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