C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254190 CHSY1-001 ENSG00000131873 9606 - 15:101175723-101251932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254190 13.669±0.00 15.857±0.00 1.769±0.00 5.477±3.24 6.642±3.11 5.256±2.23 3.290±2.14 3.835±3.08 1.709±0.52 18.898±13.09 1.571±1.02 12.143±4.17 15.751±7.65 9.519±5.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002063 IEA chondrocyte development
GO:0005576 IDA extracellular region
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0009954 IEA proximal/distal pattern formation
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0030279 IMP negative regulation of ossification
GO:0031667 IEA response to nutrient levels
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding
GO:0047238 IDA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
GO:0051216 IEA cartilage development
GO:0051923 IEA sulfation
GO:0060349 IEA bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036372 Chsy1-001 protein_coding Mus_musculus 0 3387
ENSDART00000104536 chsy1-201 protein_coding Danio_rerio 0 1064
ENSMUST00000080721 Chsy3-201 protein_coding Mus_musculus 0 542
ENSDART00000149677 chsy1-001 protein_coding Danio_rerio 0 401

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