C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin-related protein 10 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131966 ACTR10 9606 + 14:58200080-58235636 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254286 ACTR10-002 58200138-58235636 protein_coding
  ENST00000545307 ACTR10-001 58200080-58234760 nonsense_mediated_decay
  ENST00000553907 ACTR10-021 58223623-58234786 nonsense_mediated_decay
  ENST00000554402 ACTR10-018 58200219-58234768 nonsense_mediated_decay
  ENST00000554642 ACTR10-011 58223638-58234790 protein_coding
  ENST00000554790 ACTR10-019 58219670-58232268 retained_intron
  ENST00000555229 ACTR10-017 58200142-58234755 nonsense_mediated_decay
  ENST00000555337 ACTR10-014 58200149-58232161 nonsense_mediated_decay
  ENST00000555965 ACTR10-020 58223599-58232268 retained_intron
  ENST00000556243 ACTR10-003 58200211-58209107 nonsense_mediated_decay
  ENST00000556312 ACTR10-004 58200170-58209257 retained_intron
  ENST00000556449 ACTR10-009 58223493-58232108 retained_intron
  ENST00000556694 ACTR10-012 58211084-58223827 retained_intron
  ENST00000556748 ACTR10-005 58200154-58223856 nonsense_mediated_decay
  ENST00000557583 ACTR10-008 58219518-58230476 retained_intron
  ENST00000557711 ACTR10-006 58213034-58234734 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254286ENST00000545307ENST00000553907ENST00000554402ENST00000554642ENST00000554790ENST00000555229ENST00000555965ENST00000556694ENST00000557711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254286 1.247±0.00 2.887±0.00 1.105±0.00 2.990±0.00 1.731±0.00 2.620±0.00 N/A 3.771±0.00 N/A 1.837±0.00 N/A 3.664±2.18 2.442±0.00 2.831±0.00
ENST00000545307 N/A N/A N/A N/A N/A N/A N/A N/A 1.345±0.00 N/A 2.986±0.00 8.071±0.00 9.187±0.00 6.811±0.00
ENST00000553907 2.686±0.00 5.172±0.00 N/A N/A 3.796±0.00 N/A N/A N/A N/A 3.691±0.00 N/A 29.049±0.00 14.819±0.00 11.183±5.71
ENST00000554402 2.193±0.00 N/A N/A N/A 4.134±0.00 1.639±0.00 3.345±0.55 5.888±5.25 4.047±2.52 4.167±0.00 3.473±0.04 10.129±2.37 6.290±2.37 5.566±0.00
ENST00000554642 N/A N/A 3.209±0.00 20.480±0.00 9.911±0.00 5.307±0.00 2.829±0.00 5.454±0.00 3.569±0.13 8.849±0.00 N/A 12.277±0.00 8.150±0.00 N/A
ENST00000554790 N/A N/A N/A 19.923±0.00 N/A 4.758±0.00 3.795±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000555229 7.904±0.00 9.143±0.00 N/A 20.486±0.00 10.545±0.00 13.049±0.00 9.454±8.48 15.349±0.00 4.082±0.00 10.571±0.00 4.328±0.00 11.676±4.83 12.798±2.71 15.436±0.00
ENST00000555965 N/A N/A 9.774±0.00 N/A N/A 6.046±0.00 N/A N/A N/A N/A 9.176±0.00 N/A N/A N/A
ENST00000556694 N/A N/A N/A N/A N/A N/A N/A 3.858±0.00 N/A N/A N/A N/A N/A N/A
ENST00000557711 N/A N/A 0.985±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022F CIL_00022F_0001 CGP 14:57563922-58298139
CIL_0001K7 CIL_0001K7_0001 CGP 14:58200080-58272012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005869 IEA dynactin complex
GO:0007018 IEA microtubule-based movement

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038432 actr10 actin-related protein 10 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000021076 Actr10 ARP10 actin-related protein 10 protein_coding Mus_musculus

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