C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00022F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151812-ENSG00000139971 CGP 9606 14:57563922-58298139
GeneTranscriptPositionBiotype
ENSG00000100567 (PSMA3)
proteasome (prosome, macropain) subunit, alpha type, 3 		ENST00000216455 (PSMA3-001) 58244831-58272007 protein_coding
ENST00000412908 (PSMA3-002) 58244877-58272012 protein_coding
ENST00000553665 (PSMA3-008) 58244856-58258454 retained_intron
ENST00000553677 (PSMA3-007) 58257925-58272006 protein_coding
ENST00000554207 (PSMA3-005) 58263524-58267796 retained_intron
ENST00000554456 (PSMA3-014) 58244874-58245478 processed_transcript
ENST00000554812 (PSMA3-006) 58244846-58268139 retained_intron
ENST00000555743 (PSMA3-016) 58244879-58267528 retained_intron
ENST00000555931 (PSMA3-011) 58244873-58267504 nonsense_mediated_decay
ENST00000556321 (PSMA3-015) 58247789-58258081 retained_intron
ENST00000557087 (PSMA3-012) 58244866-58270998 nonsense_mediated_decay
ENST00000557290 (PSMA3-004) 58269975-58272004 retained_intron
ENST00000557508 (PSMA3-013) 58244904-58272007 protein_coding
ENSG00000131966 (ACTR10)
actin-related protein 10 homolog (S. cerevisiae) 		ENST00000254286 (ACTR10-002) 58200138-58235636 protein_coding
ENST00000545307 (ACTR10-001) 58200080-58234760 nonsense_mediated_decay
ENST00000553907 (ACTR10-021) 58223623-58234786 nonsense_mediated_decay
ENST00000554402 (ACTR10-018) 58200219-58234768 nonsense_mediated_decay
ENST00000554642 (ACTR10-011) 58223638-58234790 protein_coding
ENST00000554790 (ACTR10-019) 58219670-58232268 retained_intron
ENST00000555229 (ACTR10-017) 58200142-58234755 nonsense_mediated_decay
ENST00000555337 (ACTR10-014) 58200149-58232161 nonsense_mediated_decay
ENST00000555965 (ACTR10-020) 58223599-58232268 retained_intron
ENST00000556243 (ACTR10-003) 58200211-58209107 nonsense_mediated_decay
ENST00000556312 (ACTR10-004) 58200170-58209257 retained_intron
ENST00000556449 (ACTR10-009) 58223493-58232108 retained_intron
ENST00000556694 (ACTR10-012) 58211084-58223827 retained_intron
ENST00000556748 (ACTR10-005) 58200154-58223856 nonsense_mediated_decay
ENST00000557583 (ACTR10-008) 58219518-58230476 retained_intron
ENST00000557711 (ACTR10-006) 58213034-58234734 retained_intron
ENSG00000139971 (C14orf37)
chromosome 14 open reading frame 37 		ENST00000267485 (C14orf37-001) 58000761-58152213 protein_coding
ENST00000334342 (C14orf37-002) 58116124-58152183 processed_transcript
ENST00000554218 (C14orf37-006) 58139101-58298139 processed_transcript
ENST00000555101 (C14orf37-004) 58131207-58133131 protein_coding
ENST00000556788 (C14orf37-005) 57999735-58004024 processed_transcript
ENST00000557175 (C14orf37-003) 58116116-58139241 processed_transcript
ENSG00000180189 (HMGB1P14)
high mobility group box 1 pseudogene 14 		ENST00000557424 (HMGB1P14-001) 58284773-58285363 processed_pseudogene
ENSG00000243023 (UBA52P3)
ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 		ENST00000491303 (UBA52P3-001) 58141279-58141660 processed_pseudogene
ENSG00000243700 (RN7SL598P)
RNA, 7SL, cytoplasmic 598, pseudogene 		ENST00000494391 (RN7SL598P-201) 58179771-58180064 misc_RNA
ENSG00000252782 (RNU6-341P)
RNA, U6 small nuclear 341, pseudogene 		ENST00000516973 (RNU6-341P-201) 58292293-58292388 snRNA
ENSG00000258519 (RP11-349A22.3)
 ENST00000555129 (RP11-349A22.3-001) 58184576-58185507 processed_pseudogene
ENSG00000258682 (CTD-2002H8.2)
 ENST00000557322 (CTD-2002H8.2-001) 58264662-58269681 sense_overlapping
ENSG00000258836 (RP11-349A22.2)
 ENST00000555466 (RP11-349A22.2-001) 58100985-58101574 processed_pseudogene
ENSG00000258856 (CTD-2325K12.1)
 ENST00000555494 (CTD-2325K12.1-001) 57629926-57630688 transcribed_processed_pseudogene
ENST00000600311 (CTD-2325K12.1-002) 57629841-57631162 processed_transcript
ENSG00000259039 (RP11-409I10.2)
 ENST00000555600 (RP11-409I10.2-001) 57578632-57581320 antisense
ENSG00000259969 (RP11-999E24.3)
 ENST00000563647 (RP11-999E24.3-001) 57993545-57994525 sense_overlapping
ENSG00000279636 (LINC00216)
long intergenic non-protein coding RNA 216 		ENST00000623548 (LINC00216-001) 58288033-58289158 lincRNA
CIL_00022F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021852-ENSMUSG00000036242 CGP 10090 14:49298519-49783383
GeneTranscriptPositionBiotype
ENSMUSG00000021852 (Slc35f4)
solute carrier family 35, member F4 		ENSMUST00000074368 (Slc35f4-001) 49298519-49525886 protein_coding
ENSMUST00000123534 (Slc35f4-004) 49312091-49526046 protein_coding
ENSMUST00000135254 (Slc35f4-005) 49303306-49314209 processed_transcript
ENSMUST00000138884 (Slc35f4-002) 49298519-49525865 protein_coding
ENSMUST00000146164 (Slc35f4-003) 49317055-49525853 retained_intron
ENSMUSG00000036242 (3632451O06Rik)
RIKEN cDNA 3632451O06 gene 		ENSMUST00000036972 (3632451O06Rik-001) 49681560-49783383 protein_coding
ENSMUST00000118129 (3632451O06Rik-002) 49681668-49783371 protein_coding
ENSMUST00000177321 (3632451O06Rik-003) 49728889-49751547 processed_transcript
ENSMUSG00000082967 (Gm16082)
predicted gene 16082 		ENSMUST00000115992 (Gm16082-001) 49713246-49713622 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00022F_0001ENSG00000100567ENST00000216455ENST00000412908ENST00000553665ENST00000553677ENST00000554207ENST00000554456ENST00000554812ENST00000555743ENST00000555931ENST00000556321ENST00000557087ENST00000557290ENST00000557508ENSG00000131966ENST00000254286ENST00000545307ENST00000553907ENST00000554402ENST00000554642ENST00000554790ENST00000555229ENST00000555337ENST00000555965ENST00000556243ENST00000556312ENST00000556449ENST00000556694ENST00000556748ENST00000557583ENST00000557711ENSG00000139971ENST00000267485ENST00000334342ENST00000554218ENST00000555101ENST00000556788ENST00000557175ENSG00000180189ENST00000557424ENSG00000243023ENST00000491303ENSG00000243700ENST00000494391ENSG00000252782ENST00000516973ENSG00000258519ENST00000555129ENSG00000258682ENST00000557322ENSG00000258836ENST00000555466ENSG00000258856ENST00000555494ENST00000600311ENSG00000259039ENST00000555600ENSG00000259969ENST00000563647ENSG00000279636ENST00000623548CIL_00022F_0002ENSMUSG00000021852ENSMUST00000074368ENSMUST00000123534ENSMUST00000135254ENSMUST00000138884ENSMUST00000146164ENSMUSG00000036242ENSMUST00000036972ENSMUST00000118129ENSMUST00000177321ENSMUSG00000082967ENSMUST00000115992
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100567 ENST00000216455 7.352±0.00 N/A N/A 6.591±0.52 23.136±4.99 13.329±3.36 21.784±12.93 19.009±0.00 26.791±15.07 12.382±3.89 24.794±7.32 39.296±12.03 47.740±13.83 17.308±7.51
ENST00000412908 4.326±0.00 N/A N/A 4.800±0.00 N/A 5.367±0.00 N/A N/A N/A 8.824±0.00 N/A 62.553±0.00 N/A 8.888±0.96
ENST00000553665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554812 N/A N/A N/A 2.425±0.00 N/A 4.717±0.00 2.261±0.00 N/A N/A N/A N/A 6.097±0.00 N/A N/A
ENST00000555743 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.821±0.00 N/A N/A N/A N/A
ENST00000555931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557087 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.290±0.00 N/A 107.235±0.00 50.112±0.00 36.092±0.00
ENST00000557290 N/A N/A N/A N/A N/A N/A N/A N/A 6.577±0.00 6.633±0.00 N/A N/A N/A N/A
ENST00000557508 15.089±0.00 38.446±0.00 N/A 12.163±0.19 17.993±0.00 8.454±0.00 N/A 49.973±0.00 N/A N/A N/A 32.687±0.00 N/A 12.378±0.00
ENSG00000131966 ENST00000254286 1.247±0.00 2.887±0.00 1.105±0.00 2.990±0.00 1.731±0.00 2.620±0.00 N/A 3.771±0.00 N/A 1.837±0.00 N/A 3.664±2.18 2.442±0.00 2.831±0.00
ENST00000545307 N/A N/A N/A N/A N/A N/A N/A N/A 1.345±0.00 N/A 2.986±0.00 8.071±0.00 9.187±0.00 6.811±0.00
ENST00000553907 2.686±0.00 5.172±0.00 N/A N/A 3.796±0.00 N/A N/A N/A N/A 3.691±0.00 N/A 29.049±0.00 14.819±0.00 11.183±5.71
ENST00000554402 2.193±0.00 N/A N/A N/A 4.134±0.00 1.639±0.00 3.345±0.55 5.888±5.25 4.047±2.52 4.167±0.00 3.473±0.04 10.129±2.37 6.290±2.37 5.566±0.00
ENST00000554642 N/A N/A 3.209±0.00 20.480±0.00 9.911±0.00 5.307±0.00 2.829±0.00 5.454±0.00 3.569±0.13 8.849±0.00 N/A 12.277±0.00 8.150±0.00 N/A
ENST00000554790 N/A N/A N/A 19.923±0.00 N/A 4.758±0.00 3.795±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000555229 7.904±0.00 9.143±0.00 N/A 20.486±0.00 10.545±0.00 13.049±0.00 9.454±8.48 15.349±0.00 4.082±0.00 10.571±0.00 4.328±0.00 11.676±4.83 12.798±2.71 15.436±0.00
ENST00000555337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555965 N/A N/A 9.774±0.00 N/A N/A 6.046±0.00 N/A N/A N/A N/A 9.176±0.00 N/A N/A N/A
ENST00000556243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556694 N/A N/A N/A N/A N/A N/A N/A 3.858±0.00 N/A N/A N/A N/A N/A N/A
ENST00000556748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557711 N/A N/A 0.985±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139971 ENST00000267485 0.622±0.00 N/A 1.389±0.00 1.647±0.16 N/A 0.669±0.00 0.984±0.17 N/A 1.344±0.00 0.683±0.00 0.125±0.00 1.950±0.00 0.586±0.25 1.595±0.00
ENST00000334342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.826±0.00 N/A
ENST00000554218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180189 ENST00000557424 0.084±0.00 0.114±0.00 N/A 0.089±0.00 0.089±0.00 0.148±0.13 0.335±0.27 0.091±0.00 0.067±0.00 0.717±0.00 0.528±0.34 0.166±0.11 0.055±0.03 0.062±0.04
ENSG00000243023 ENST00000491303 0.214±0.00 0.288±0.00 N/A N/A 0.123±0.00 0.113±0.00 N/A 0.240±0.00 N/A N/A 0.098±0.00 N/A N/A N/A
ENSG00000243700 ENST00000494391 N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A 0.125±0.00
ENSG00000252782 ENST00000516973 N/A 2.447±0.00 N/A 0.287±0.00 N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000258519 ENST00000555129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00
ENSG00000258682 ENST00000557322 0.203±0.00 1.181±0.00 1.996±0.00 0.463±0.21 0.671±0.28 0.663±0.42 0.546±0.25 0.669±0.00 0.783±0.72 0.379±0.00 N/A 0.623±0.39 0.459±0.00 0.424±0.12
ENSG00000258836 ENST00000555466 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258856 ENST00000555494 N/A N/A 0.179±0.00 N/A N/A 0.012±0.00 0.029±0.00 N/A N/A N/A N/A 0.119±0.08 N/A 0.066±0.00
ENST00000600311 N/A N/A N/A N/A N/A N/A N/A N/A 0.403±0.00 N/A N/A N/A N/A N/A
ENSG00000259039 ENST00000555600 0.049±0.00 N/A 0.495±0.00 0.178±0.00 0.185±0.14 N/A 0.148±0.00 0.232±0.00 N/A 0.519±0.00 N/A 0.109±0.06 N/A 0.399±0.12
ENSG00000259969 ENST00000563647 0.497±0.00 0.236±0.00 0.294±0.00 2.011±0.00 0.596±0.30 0.690±0.38 0.811±0.53 N/A 0.294±0.09 0.660±0.09 0.131±0.00 1.725±1.77 0.152±0.00 2.050±0.54
ENSG00000279636 ENST00000623548 N/A N/A N/A N/A N/A 7.850±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021852 ENSMUST00000074368 N/A N/A N/A 1.502±0.26 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A 0.026±0.02 N/A
ENSMUST00000123534 N/A N/A N/A 0.374±0.04 N/A N/A N/A N/A 0.003±0.00 0.017±0.00 N/A 0.008±0.00 0.006±0.00 0.039±0.04
ENSMUST00000135254 0.028±0.00 N/A 0.006±0.00 N/A N/A N/A 0.027±0.00 N/A 0.035±0.00 N/A 0.039±0.01 0.037±0.01 0.035±0.02 0.014±0.00
ENSMUST00000138884 N/A N/A 0.027±0.00 3.934±0.00 0.053±0.00 0.100±0.00 0.025±0.01 0.033±0.00 0.023±0.00 N/A 0.030±0.00 0.055±0.01 0.003±0.00 0.039±0.01
ENSMUST00000146164 N/A N/A N/A 0.215±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.01 0.006±0.00 N/A 0.016±0.00
ENSMUSG00000036242 ENSMUST00000036972 0.567±0.21 N/A 9.485±0.92 4.248±1.61 0.584±0.14 0.593±0.00 1.308±0.61 1.137±0.30 0.174±0.11 0.522±0.18 0.318±0.15 1.798±1.10 1.621±1.08 0.190±0.00
ENSMUST00000118129 0.388±0.17 0.394±0.17 2.725±0.13 0.797±0.07 0.251±0.07 0.622±0.24 1.223±0.65 1.751±0.68 0.044±0.05 0.737±0.20 0.306±0.16 0.687±0.33 0.598±0.18 0.111±0.05
ENSMUST00000177321 N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A 0.457±0.01 N/A N/A 5.907±1.83 N/A 0.154±0.00
ENSMUSG00000082967 ENSMUST00000115992 N/A N/A 0.192±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 0.209±0.23 N/A

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