C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pentatricopeptide repeat domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132300 PTCD3 9606 + 2:86106182-86142157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254630 PTCD3-001 86106182-86142157 protein_coding
  ENST00000409326 PTCD3-002 86106223-86117159 nonsense_mediated_decay
  ENST00000409783 PTCD3-009 86106224-86123733 protein_coding
  ENST00000418628 PTCD3-004 86106226-86117120 nonsense_mediated_decay
  ENST00000464541 PTCD3-013 86127719-86133228 retained_intron
  ENST00000465560 PTCD3-005 86106223-86121591 processed_transcript
  ENST00000467273 PTCD3-018 86132824-86134985 retained_intron
  ENST00000469585 PTCD3-014 86127949-86135198 retained_intron
  ENST00000472044 PTCD3-017 86133269-86134877 retained_intron
  ENST00000473829 PTCD3-006 86106244-86108925 retained_intron
  ENST00000476215 PTCD3-021 86127872-86132832 retained_intron
  ENST00000477520 PTCD3-015 86133323-86135198 processed_transcript
  ENST00000480102 PTCD3-012 86121494-86127437 retained_intron
  ENST00000483925 PTCD3-007 86108345-86119181 retained_intron
  ENST00000484203 PTCD3-011 86121465-86127661 retained_intron
  ENST00000487043 PTCD3-020 86127930-86136881 retained_intron
  ENST00000488801 PTCD3-003 86106226-86112095 processed_transcript
  ENST00000493430 PTCD3-016 86130890-86134955 retained_intron
  ENST00000494323 PTCD3-019 86132878-86134936 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254630ENST00000465560ENST00000484203ENST00000487043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254630 1.313±0.00 3.267±0.00 2.730±0.00 5.268±1.19 2.294±0.35 2.923±0.72 6.213±3.94 4.309±1.09 3.801±0.00 1.814±0.40 5.879±0.53 6.502±1.80 3.785±0.91 8.880±1.60
ENST00000465560 N/A N/A N/A N/A 8.061±0.00 9.148±0.00 6.251±0.00 6.942±0.00 N/A N/A N/A 10.809±0.00 13.313±0.00 N/A
ENST00000484203 N/A N/A N/A N/A 4.818±0.00 7.413±0.00 N/A 7.295±0.00 N/A N/A N/A 8.680±0.00 N/A N/A
ENST00000487043 N/A N/A N/A N/A N/A N/A N/A 8.858±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006417 IEA regulation of translation
GO:0019843 IDA rRNA binding
GO:0032543 IMP mitochondrial translation
GO:0043024 IDA ribosomal small subunit binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057494 ptcd3 pentatricopeptide repeat domain 3 protein_coding Danio_rerio
ENSMUSG00000063884 Ptcd3 pentatricopeptide repeat domain 3 protein_coding Mus_musculus

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