C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pentatricopeptide repeat domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000057494 ptcd3 7955 - 14:20056685-20080757 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000080138 ptcd3-001 20056685-20080757 protein_coding
  ENSDART00000144136 ptcd3-003 20070780-20080302 retained_intron
  ENSDART00000147565 ptcd3-002 20071709-20080528 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000080138ENSDART00000147565
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000080138 6.244±4.25 13.548±0.27 4.705±5.50 1.447±0.00 5.087±0.00
ENSDART00000147565 2.576±0.41 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QA CIL_0004QA_0001 CGP 14:20023591-20080757
CIL_0006Y1 CIL_0006Y1_0001 CGP 14:20056685-20140596

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000132300 PTCD3 pentatricopeptide repeat domain 3 protein_coding Homo_sapiens
ENSMUSG00000063884 Ptcd3 pentatricopeptide repeat domain 3 protein_coding Mus_musculus

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