C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: brevican
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132692 BCAN 9606 + 1:156641390-156659532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329117 BCAN-001 156641948-156659528 protein_coding
  ENST00000361588 BCAN-002 156642243-156653472 protein_coding
  ENST00000424639 BCAN-006 156642130-156648798 protein_coding
  ENST00000441358 BCAN-008 156641390-156647144 protein_coding
  ENST00000457777 BCAN-007 156642114-156647682 protein_coding
  ENST00000479949 BCAN-004 156642132-156652678 nonsense_mediated_decay
  ENST00000491823 BCAN-005 156647128-156651551 nonsense_mediated_decay
  ENST00000496038 BCAN-003 156656729-156659532 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000361588ENST00000424639ENST00000441358ENST00000479949ENST00000496038
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000361588 N/A 6.150±4.11 N/A N/A 0.118±0.00 N/A N/A N/A 0.490±0.00 0.589±0.00
ENST00000424639 N/A N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000441358 N/A N/A N/A N/A N/A 0.154±0.00 N/A 0.664±0.60 N/A N/A
ENST00000479949 N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000496038 0.159±0.00 N/A 0.097±0.00 0.181±0.00 N/A 0.147±0.00 0.057±0.00 0.039±0.00 0.494±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492
CIL_0000CX CIL_0000CX_0002 CGP 1:156619294-156659532

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0007155 IEA cell adhesion
GO:0021766 IEA hippocampus development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0030246 IEA carbohydrate binding
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016736 bcan brevican protein_coding Danio_rerio
ENSMUSG00000004892 Bcan brevican protein_coding Mus_musculus

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