C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brevican
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361588 BCAN-002 ENSG00000132692 9606 + 1:156642243-156653472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartOvaryTestisENST00000361588
Transcript ID Brain Heart Ovary Testis
ENST00000361588 6.150±4.11 0.118±0.00 0.490±0.00 0.589±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492
CIL_0000CX CIL_0000CX_0002 CGP 1:156619294-156659532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005576 TAS extracellular region
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0030246 IEA carbohydrate binding
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090971 Bcan-201 protein_coding Mus_musculus 0 1254

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