C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin IV
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132872 SYT4 9606 - 18:43267878-43277650 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255224 SYT4-001 43267878-43277650 protein_coding
  ENST00000585604 SYT4-003 43270181-43277499 processed_transcript
  ENST00000586678 SYT4-002 43269667-43277535 processed_transcript
  ENST00000589479 SYT4-006 43270552-43272151 processed_transcript
  ENST00000590752 SYT4-004 43270009-43277490 protein_coding
  ENST00000591820 SYT4-005 43274033-43277490 processed_transcript
  ENST00000593720 SYT4-013 43271732-43277376 protein_coding
  ENST00000596867 SYT4-012 43270500-43277490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000255224ENST00000585604ENST00000586678ENST00000589479ENST00000590752ENST00000591820ENST00000596867
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000255224 0.005±0.00 0.009±0.00 0.013±0.00 19.810±3.29 0.007±0.00 N/A 0.111±0.00 0.015±0.00 0.004±0.00 N/A 0.002±0.00 0.518±0.00
ENST00000585604 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.251±0.00 N/A N/A
ENST00000586678 N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A 0.057±0.00 N/A N/A
ENST00000589479 N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590752 N/A N/A N/A N/A 0.050±0.04 0.537±0.00 0.075±0.00 N/A N/A 0.152±0.00 N/A N/A
ENST00000591820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A
ENST00000596867 N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WU CIL_0003WU_0001 CGP 18:42743227-43277650

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001786 IEA phosphatidylserine binding
GO:0005215 IEA transporter activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006887 IEA exocytosis
GO:0007269 IEA neurotransmitter secretion
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030276 IEA clathrin binding
GO:0031045 IEA dense core granule
GO:0031339 IEA negative regulation of vesicle fusion
GO:0043005 IEA neuron projection
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036505 syt4 synaptotagmin IV protein_coding Danio_rerio
ENSMUSG00000024261 Syt4 synaptotagmin IV protein_coding Mus_musculus

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