C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152214-ENSG00000132872 CGP 9606 18:42743227-43277650
GeneTranscriptPositionBiotype
ENSG00000132872 (SYT4)
synaptotagmin IV 		ENST00000255224 (SYT4-001) 43267878-43277650 protein_coding
ENST00000585604 (SYT4-003) 43270181-43277499 processed_transcript
ENST00000586678 (SYT4-002) 43269667-43277535 processed_transcript
ENST00000589479 (SYT4-006) 43270552-43272151 processed_transcript
ENST00000590752 (SYT4-004) 43270009-43277490 protein_coding
ENST00000591820 (SYT4-005) 43274033-43277490 processed_transcript
ENST00000593720 (SYT4-013) 43271732-43277376 protein_coding
ENST00000596867 (SYT4-012) 43270500-43277490 protein_coding
ENSG00000152214 (RIT2)
Ras-like without CAAX 2 		ENST00000326695 (RIT2-001) 42743227-43115691 protein_coding
ENST00000589109 (RIT2-002) 42743227-43115691 protein_coding
ENST00000590910 (RIT2-003) 42743469-43115649 protein_coding
ENST00000594852 (RIT2-004) 42923365-42974095 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003WU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057455-ENSMUSG00000024261 CGP 10090 18:30973489-31447415
GeneTranscriptPositionBiotype
ENSMUSG00000024261 (Syt4)
synaptotagmin IV 		ENSMUST00000025110 (Syt4-201) 31437808-31447415 protein_coding
ENSMUSG00000057455 (Rit2)
Ras-like without CAAX 2 		ENSMUST00000082070 (Rit2-003) 30973489-31317290 nonsense_mediated_decay
ENSMUST00000139924 (Rit2-002) 31206066-31317111 protein_coding
ENSMUST00000153060 (Rit2-001) 30974315-31317133 protein_coding
ENSMUST00000153196 (Rit2-004) 31153271-31212732 processed_transcript
ENSMUSG00000096934 (Gm26658)
predicted gene, 26658 		ENSMUST00000181067 (Gm26658-201) 31440318-31449099 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WU_0001ENSG00000132872ENST00000255224ENST00000585604ENST00000586678ENST00000589479ENST00000590752ENST00000591820ENST00000593720ENST00000596867ENSG00000152214ENST00000326695ENST00000589109ENST00000590910ENST00000594852CIL_0003WU_0002ENSMUSG00000024261ENSMUST00000025110ENSMUSG00000057455ENSMUST00000082070ENSMUST00000139924ENSMUST00000153060ENSMUST00000153196ENSMUSG00000096934ENSMUST00000181067
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WU_0001ENSG00000132872ENST00000255224ENST00000585604ENST00000586678ENST00000589479ENST00000590752ENST00000591820ENST00000596867ENSG00000152214ENST00000326695ENST00000590910ENST00000594852CIL_0003WU_0002ENSMUSG00000024261ENSMUST00000025110ENSMUSG00000057455ENSMUST00000082070ENSMUST00000153060ENSMUST00000153196ENSMUSG00000096934ENSMUST00000181067
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132872 ENST00000255224 0.005±0.00 0.009±0.00 0.013±0.00 19.810±3.29 0.007±0.00 N/A 0.111±0.00 0.015±0.00 0.004±0.00 N/A 0.002±0.00 0.518±0.00 N/A N/A
ENST00000585604 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.251±0.00 N/A N/A N/A N/A
ENST00000586678 N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A
ENST00000589479 N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590752 N/A N/A N/A N/A 0.050±0.04 0.537±0.00 0.075±0.00 N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENST00000591820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A
ENST00000593720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596867 N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000152214 ENST00000326695 N/A N/A N/A 7.001±0.83 N/A 0.211±0.00 N/A N/A N/A N/A N/A 0.067±0.00 0.140±0.01 0.163±0.02
ENST00000589109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A
ENST00000594852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.07 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024261 ENSMUST00000025110 0.050±0.05 0.561±0.15 0.042±0.01 21.545±6.26 0.048±0.02 0.288±0.12 0.027±0.01 0.145±0.09 0.025±0.01 0.024±0.00 0.012±0.00 0.046±0.05 0.010±0.01 0.053±0.00
ENSMUSG00000057455 ENSMUST00000082070 N/A N/A N/A 0.530±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153060 0.346±0.28 1.047±0.42 0.104±0.02 10.949±3.35 0.024±0.00 0.758±0.40 0.060±0.00 0.314±0.15 0.007±0.00 0.031±0.00 0.016±0.00 0.012±0.00 0.009±0.01 0.060±0.01
ENSMUST00000153196 N/A 0.909±0.24 N/A N/A N/A N/A N/A 0.191±0.19 N/A N/A N/A 0.040±0.00 N/A 0.186±0.13
ENSMUSG00000096934 ENSMUST00000181067 N/A 2.061±0.68 N/A N/A N/A 0.375±0.21 0.020±0.01 0.085±0.05 N/A 0.021±0.00 0.015±0.00 0.052±0.05 0.020±0.00 N/A

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