C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 128, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133135 RNF128 9606 + X:106693794-106796993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255499 RNF128-001 106726664-106796993 protein_coding
  ENST00000324342 RNF128-002 106693838-106796993 protein_coding
  ENST00000418562 RNF128-003 106693794-106790205 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255499ENST00000418562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255499 0.083±0.00 0.059±0.00 4.877±0.00 1.559±0.04 0.463±0.34 4.933±2.79 0.128±0.01 17.027±2.46 7.611±5.81 3.097±0.65 1.152±0.39 3.244±2.27 6.714±0.25 0.472±0.29
ENST00000418562 N/A N/A N/A N/A N/A N/A N/A N/A 0.671±0.00 N/A N/A 6.734±0.00 11.909±0.00 0.449±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006A1 CIL_0006A1_0001 CGP X:106611930-106796993
CIL_0006AC CIL_0006AC_0001 CGP X:106693794-106876145

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005770 IEA late endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042036 IEA negative regulation of cytokine biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016867 rnf128a ring finger protein 128a protein_coding Danio_rerio
ENSDARG00000029890 si:dkeyp-86f7.4 si:dkeyp-86f7.4 protein_coding Danio_rerio
ENSMUSG00000031438 Rnf128 ring finger protein 128 protein_coding Mus_musculus

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