C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin XVIIIB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133454 MYO18B 9606 + 22:25742144-26031041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335473 MYO18B-001 25742153-26031041 protein_coding
  ENST00000407587 MYO18B-006 25742234-26030644 protein_coding
  ENST00000418374 MYO18B-005 25770027-26027766 retained_intron
  ENST00000534908 MYO18B-008 25901178-25903764 processed_transcript
  ENST00000536101 MYO18B-003 25742144-26027766 protein_coding
  ENST00000536204 MYO18B-009 25901178-25903797 processed_transcript
  ENST00000539302 MYO18B-002 25761034-26030586 nonsense_mediated_decay
  ENST00000539544 MYO18B-010 25953535-25965071 processed_transcript
  ENST00000540454 MYO18B-004 26027049-26030644 nonsense_mediated_decay
  ENST00000543971 MYO18B-007 25955315-26030645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335473ENST00000407587ENST00000418374ENST00000536101ENST00000539302ENST00000540454ENST00000543971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335473 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A 5.690±0.00 0.019±0.00 N/A N/A
ENST00000407587 N/A N/A N/A N/A 0.250±0.00 N/A 7.748±5.11 0.049±0.00 N/A N/A 66.842±0.00 N/A N/A 1.854±0.00
ENST00000418374 N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A 0.003±0.00 N/A N/A 0.041±0.00 0.123±0.05 1.456±0.00
ENST00000536101 N/A 0.040±0.00 N/A N/A N/A N/A 6.897±2.89 N/A 0.104±0.00 N/A 10.989±0.00 0.016±0.00 N/A N/A
ENST00000539302 0.034±0.00 N/A 0.005±0.00 0.031±0.01 0.034±0.00 0.016±0.00 6.074±0.00 0.012±0.00 N/A N/A N/A N/A 0.079±0.05 1.467±0.00
ENST00000540454 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A 0.200±0.00 N/A 0.101±0.00 N/A N/A
ENST00000543971 N/A N/A N/A N/A 2.279±0.00 0.014±0.00 N/A N/A N/A N/A 166.983±0.00 N/A 0.326±0.00 7.789±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UJ CIL_0004UJ_0002 CGP 22:25564849-26031041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001570 IEA vasculogenesis
GO:0001701 IEA in utero embryonic development
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006412 IEA translation
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0016461 IDA unconventional myosin complex
GO:0030018 IEA Z disc
GO:0031941 IEA filamentous actin
GO:0048739 IEA cardiac muscle fiber development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086662 myosin XVIIIB protein_coding Danio_rerio
ENSDARG00000089630 CABZ01087088.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090163 MYO18B (2 of 3) myosin XVIIIB protein_coding Danio_rerio
ENSDARG00000091350 CABZ01073112.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000072720 Myo18b myosin XVIIIb protein_coding Mus_musculus

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