C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KRAB-A domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133619 KRBA1 9606 + 7:149714781-149734575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319551 KRBA1-001 149715057-149734575 protein_coding
  ENST00000467333 KRBA1-007 149720950-149722040 protein_coding
  ENST00000485033 KRBA1-004 149719639-149734571 protein_coding
  ENST00000486744 KRBA1-005 149714781-149720124 protein_coding
  ENST00000489951 KRBA1-009 149730040-149730697 retained_intron
  ENST00000496080 KRBA1-008 149723561-149725441 retained_intron
  ENST00000496259 KRBA1-002 149715011-149734571 protein_coding
  ENST00000497895 KRBA1-006 149719422-149720990 protein_coding
  ENST00000621069 KRBA1-003 149720101-149734571 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319551ENST00000467333ENST00000485033ENST00000489951ENST00000496080ENST00000496259ENST00000497895ENST00000621069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319551 0.367±0.00 N/A N/A 1.153±0.00 N/A N/A N/A N/A N/A N/A N/A 1.042±0.17 N/A 0.773±0.00
ENST00000467333 N/A N/A N/A N/A N/A N/A 0.310±0.00 0.243±0.00 0.154±0.00 N/A N/A N/A N/A N/A
ENST00000485033 N/A N/A N/A 0.239±0.00 0.793±0.00 N/A 1.106±1.04 N/A 0.136±0.02 0.069±0.00 0.538±0.00 1.205±0.34 0.511±0.18 0.957±0.00
ENST00000489951 N/A N/A N/A N/A N/A N/A N/A N/A 0.691±0.00 N/A N/A N/A N/A N/A
ENST00000496080 N/A N/A 0.183±0.00 N/A N/A N/A N/A 1.102±0.00 N/A N/A N/A N/A N/A N/A
ENST00000496259 1.058±0.00 1.298±0.00 0.049±0.00 1.310±1.08 0.553±0.02 0.768±0.00 4.450±0.00 0.926±0.00 0.100±0.00 N/A 1.393±0.00 2.048±1.74 0.469±0.24 1.945±0.00
ENST00000497895 N/A N/A 1.059±0.00 N/A N/A N/A 0.448±0.00 N/A N/A 0.896±0.00 N/A 1.762±0.00 N/A N/A
ENST00000621069 N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A 0.362±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Y0 CIL_0004Y0_0001 CGP 7:149472794-149734575
CIL_0004XZ CIL_0004XZ_0001 CGP 7:149714781-149773479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000042810 Krba1 KRAB-A domain containing 1 protein_coding Mus_musculus

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