C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KRAB-A domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042810 Krba1 10090 + 6:48395586-48419855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031815 Krba1-002 48395614-48416904 protein_coding
  ENSMUST00000077093 Krba1-003 48395658-48419545 protein_coding
  ENSMUST00000114571 Krba1-001 48395586-48419545 protein_coding
  ENSMUST00000114572 Krba1-201 48395586-48419855 protein_coding
  ENSMUST00000127980 Krba1-005 48395698-48403467 processed_transcript
  ENSMUST00000132271 Krba1-007 48406339-48409307 processed_transcript
  ENSMUST00000148697 Krba1-006 48404043-48408537 processed_transcript
  ENSMUST00000154536 Krba1-004 48409199-48419545 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031815ENSMUST00000077093ENSMUST00000114572ENSMUST00000154536
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031815 2.864±0.40 13.479±2.46 6.941±0.72 8.931±3.60 5.630±2.97 3.835±1.99 2.788±1.01 2.906±1.17 1.732±0.68 4.733±0.78 8.191±3.47 9.988±3.16 3.586±0.88 12.961±4.46
ENSMUST00000077093 N/A 1.998±0.36 N/A 1.936±0.00 1.572±0.83 1.233±0.05 1.052±0.00 1.005±0.24 0.325±0.17 1.323±0.00 N/A 2.185±0.67 N/A 1.442±0.53
ENSMUST00000114572 N/A 3.403±0.36 0.919±0.00 2.279±0.00 N/A 1.081±0.04 0.779±0.00 0.780±0.00 0.336±0.17 0.869±0.09 N/A 4.041±0.78 N/A 4.980±0.58
ENSMUST00000154536 1.006±0.00 4.803±1.92 N/A N/A N/A 2.380±0.00 N/A N/A 0.186±0.00 N/A N/A 3.623±1.09 0.466±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Y0 CIL_0004Y0_0002 CGP 6:48062395-48419855
CIL_0004XZ CIL_0004XZ_0002 CGP 6:48395586-48445825

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000133619 KRBA1 KRAB-A domain containing 1 protein_coding Homo_sapiens

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