C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proline/serine-rich coiled-coil 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134222 PSRC1 9606 - 1:109279556-109283186 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369903 PSRC1-010 109279585-109283122 protein_coding
  ENST00000369904 PSRC1-002 109279556-109283115 protein_coding
  ENST00000369907 PSRC1-001 109279556-109283147 protein_coding
  ENST00000369909 PSRC1-201 109279557-109283168 protein_coding
  ENST00000409138 PSRC1-003 109279565-109283186 protein_coding
  ENST00000409267 PSRC1-009 109279556-109283125 protein_coding
  ENST00000418914 PSRC1-006 109281155-109283122 protein_coding
  ENST00000429031 PSRC1-005 109280986-109283122 protein_coding
  ENST00000459765 PSRC1-008 109281404-109283145 retained_intron
  ENST00000471740 PSRC1-011 109281619-109283144 retained_intron
  ENST00000474126 PSRC1-007 109280809-109281679 protein_coding
  ENST00000492431 PSRC1-004 109279567-109282419 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369903ENST00000369904ENST00000369907ENST00000369909ENST00000409138ENST00000429031ENST00000459765ENST00000471740ENST00000474126ENST00000492431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369903 0.415±0.00 N/A N/A N/A N/A N/A 0.273±0.00 0.278±0.00 0.921±0.00 0.161±0.00 N/A N/A 0.791±0.00 N/A
ENST00000369904 N/A N/A 0.051±0.00 5.482±4.32 0.565±0.24 N/A N/A N/A N/A N/A 0.101±0.00 1.892±1.20 0.996±0.00 3.481±0.00
ENST00000369907 N/A N/A N/A 3.068±0.00 N/A N/A N/A N/A N/A N/A N/A 0.859±0.00 2.349±0.00 4.914±0.00
ENST00000369909 N/A N/A N/A 6.863±3.91 N/A 1.727±0.00 0.119±0.00 0.282±0.00 0.887±0.00 N/A N/A 1.473±0.57 1.699±0.71 5.389±0.00
ENST00000409138 N/A 0.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429031 N/A N/A 0.260±0.00 3.739±0.00 N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000459765 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.644±0.00 N/A N/A N/A N/A
ENST00000471740 N/A N/A N/A N/A 0.148±0.00 0.449±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474126 N/A N/A N/A N/A N/A N/A N/A 1.717±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492431 N/A 0.276±0.00 N/A N/A N/A N/A 0.080±0.00 0.196±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0001578 ISS microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005819 ISS spindle
GO:0005829 IDA cytosol
GO:0005876 IDA spindle microtubule
GO:0007080 IDA mitotic metaphase plate congression
GO:0008017 ISS microtubule binding
GO:0009987 IEA cellular process
GO:0015630 ISS microtubule cytoskeleton
GO:0030308 ISS negative regulation of cell growth
GO:0030496 ISS midbody
GO:0031116 ISS positive regulation of microtubule polymerization
GO:0045737 ISS positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0060236 IDA regulation of mitotic spindle organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000068744 Psrc1 proline/serine-rich coiled-coil 1 protein_coding Mus_musculus

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