C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: periphilin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134283 PPHLN1 9606 + 12:42238447-42459715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256678 PPHLN1-008 42326167-42447165 protein_coding
  ENST00000317560 PPHLN1-024 42326174-42459715 protein_coding
  ENST00000337898 PPHLN1-002 42326145-42445446 protein_coding
  ENST00000358314 PPHLN1-004 42326157-42441955 protein_coding
  ENST00000395568 PPHLN1-010 42326166-42447327 protein_coding
  ENST00000395580 PPHLN1-003 42326145-42441950 protein_coding
  ENST00000432191 PPHLN1-025 42326178-42448618 protein_coding
  ENST00000449194 PPHLN1-006 42326168-42441963 protein_coding
  ENST00000546750 PPHLN1-011 42331787-42375026 protein_coding
  ENST00000547440 PPHLN1-022 42387390-42400485 retained_intron
  ENST00000547696 PPHLN1-020 42386973-42393686 retained_intron
  ENST00000547847 PPHLN1-012 42331798-42375068 protein_coding
  ENST00000549190 PPHLN1-001 42238447-42441947 protein_coding
  ENST00000549774 PPHLN1-018 42326158-42355678 retained_intron
  ENST00000550535 PPHLN1-017 42326181-42359658 processed_transcript
  ENST00000551406 PPHLN1-019 42326172-42375298 retained_intron
  ENST00000551658 PPHLN1-013 42343804-42351959 protein_coding
  ENST00000551723 PPHLN1-015 42326163-42393640 nonsense_mediated_decay
  ENST00000552202 PPHLN1-021 42326178-42399425 retained_intron
  ENST00000552429 PPHLN1-016 42326165-42374942 nonsense_mediated_decay
  ENST00000552761 PPHLN1-007 42326171-42441543 protein_coding
  ENST00000552794 PPHLN1-014 42350203-42387522 processed_transcript
  ENST00000610488 PPHLN1-201 42326149-42446618 protein_coding
  ENST00000613154 PPHLN1-202 42326149-42442181 protein_coding
  ENST00000619544 PPHLN1-203 42326149-42446618 protein_coding
  ENST00000624028 PPHLN1-023 42442649-42448623 TEC

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317560ENST00000337898ENST00000358314ENST00000395568ENST00000432191ENST00000449194ENST00000546750ENST00000551406ENST00000552761ENST00000610488ENST00000619544ENST00000624028
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.595±0.00 N/A 11.766±0.00 15.026±0.00
ENST00000337898 N/A N/A N/A 5.731±0.00 N/A N/A N/A N/A 3.820±0.00 N/A N/A N/A N/A N/A
ENST00000358314 5.331±0.00 13.016±0.00 N/A 6.064±0.00 5.083±0.90 3.760±0.00 N/A 5.308±2.11 4.146±0.00 3.766±0.00 N/A 5.780±0.00 4.529±0.07 N/A
ENST00000395568 N/A N/A 1.625±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.996±0.00 N/A N/A
ENST00000432191 1.677±0.00 N/A N/A N/A 2.457±0.00 2.033±0.00 1.499±0.25 2.347±0.00 1.648±0.00 1.581±0.00 1.190±0.65 4.142±0.93 1.558±0.00 4.880±0.00
ENST00000449194 N/A 6.964±0.00 N/A 8.750±1.63 5.784±0.00 3.560±0.00 5.183±0.00 N/A N/A 3.794±0.00 N/A 6.844±1.44 5.463±2.42 17.323±2.13
ENST00000546750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.241±0.00
ENST00000551406 N/A N/A N/A N/A N/A 13.512±0.00 N/A N/A 11.012±0.00 N/A N/A N/A N/A N/A
ENST00000552761 N/A 14.305±0.00 4.083±0.00 N/A 6.142±0.00 N/A N/A N/A 5.443±0.00 N/A 3.471±0.00 11.064±0.00 8.121±2.06 N/A
ENST00000610488 N/A N/A N/A N/A N/A 4.091±0.00 N/A N/A N/A N/A N/A 7.858±0.00 N/A N/A
ENST00000619544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.755±0.00 N/A N/A
ENST00000624028 N/A N/A 0.538±0.00 N/A 1.296±0.00 1.588±0.00 N/A 1.040±0.00 0.968±0.00 N/A 0.490±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0031424 IEA keratinization
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045692 pphln1 periphilin 1 protein_coding Danio_rerio
ENSDARG00000088062 PPHLN1 (2 of 2) periphilin 1 protein_coding Danio_rerio
ENSMUSG00000036167 Pphln1 periphilin 1 protein_coding Mus_musculus
ENSMUSG00000079737 3110001I22Rik RIKEN cDNA 3110001I22 gene protein_coding Mus_musculus

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