C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134294 SLC38A2 9606 - 12:46358189-46372867 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256689 SLC38A2-001 46358189-46372867 protein_coding
  ENST00000546520 SLC38A2-010 46361118-46362904 retained_intron
  ENST00000547252 SLC38A2-006 46364642-46371433 processed_transcript
  ENST00000548111 SLC38A2-012 46362290-46364553 processed_transcript
  ENST00000548236 SLC38A2-008 46362325-46364832 retained_intron
  ENST00000548785 SLC38A2-011 46361853-46362542 retained_intron
  ENST00000548870 SLC38A2-007 46364442-46367410 processed_transcript
  ENST00000549258 SLC38A2-002 46358481-46372771 nonsense_mediated_decay
  ENST00000551374 SLC38A2-003 46359385-46365307 protein_coding
  ENST00000551405 SLC38A2-005 46370512-46372446 processed_transcript
  ENST00000552414 SLC38A2-009 46363115-46364742 retained_intron
  ENST00000552703 SLC38A2-013 46360960-46362561 retained_intron
  ENST00000553252 SLC38A2-004 46370799-46372773 retained_intron
  ENST00000612232 SLC38A2-201 46361111-46370789 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256689ENST00000547252ENST00000549258ENST00000551374
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256689 37.099±0.00 31.029±0.00 1.237±0.00 10.814±2.21 9.453±4.96 10.891±7.94 18.090±13.30 12.037±2.42 13.573±3.45 16.169±7.83 14.951±12.25 14.810±7.13 22.406±8.89 9.862±1.69
ENST00000547252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.167±0.00 N/A N/A N/A
ENST00000549258 N/A N/A 3.121±0.00 N/A 5.287±0.00 N/A N/A N/A 4.660±0.00 N/A N/A 4.994±0.00 N/A N/A
ENST00000551374 N/A N/A N/A N/A N/A 5.003±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YO CIL_0005YO_0001 CGP 12:46183063-46372867

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006865 TAS amino acid transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0014047 TAS glutamate secretion
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045886 slc38a2 solute carrier family 38, member 2 protein_coding Danio_rerio
ENSMUSG00000022462 Slc38a2 solute carrier family 38, member 2 protein_coding Mus_musculus

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