C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005YO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111371-ENSG00000134294 CGP 9606 12:46183063-46372867
GeneTranscriptPositionBiotype
ENSG00000111371 (SLC38A1)
solute carrier family 38, member 1 		ENST00000398637 (SLC38A1-002) 46183063-46269012 protein_coding
ENST00000439706 (SLC38A1-003) 46187801-46268997 protein_coding
ENST00000546519 (SLC38A1-008) 46268860-46270017 processed_transcript
ENST00000546893 (SLC38A1-006) 46188565-46269119 protein_coding
ENST00000548979 (SLC38A1-010) 46197378-46198021 retained_intron
ENST00000549049 (SLC38A1-005) 46187801-46268995 protein_coding
ENST00000549633 (SLC38A1-004) 46198728-46269043 processed_transcript
ENST00000550173 (SLC38A1-009) 46229232-46269951 protein_coding
ENST00000551506 (SLC38A1-011) 46207583-46268806 processed_transcript
ENST00000552197 (SLC38A1-001) 46195725-46267701 protein_coding
ENST00000612161 (SLC38A1-201) 46196127-46239895 protein_coding
ENSG00000134294 (SLC38A2)
solute carrier family 38, member 2 		ENST00000256689 (SLC38A2-001) 46358189-46372867 protein_coding
ENST00000546520 (SLC38A2-010) 46361118-46362904 retained_intron
ENST00000547252 (SLC38A2-006) 46364642-46371433 processed_transcript
ENST00000548111 (SLC38A2-012) 46362290-46364553 processed_transcript
ENST00000548236 (SLC38A2-008) 46362325-46364832 retained_intron
ENST00000548785 (SLC38A2-011) 46361853-46362542 retained_intron
ENST00000548870 (SLC38A2-007) 46364442-46367410 processed_transcript
ENST00000549258 (SLC38A2-002) 46358481-46372771 nonsense_mediated_decay
ENST00000551374 (SLC38A2-003) 46359385-46365307 protein_coding
ENST00000551405 (SLC38A2-005) 46370512-46372446 processed_transcript
ENST00000552414 (SLC38A2-009) 46363115-46364742 retained_intron
ENST00000552703 (SLC38A2-013) 46360960-46362561 retained_intron
ENST00000553252 (SLC38A2-004) 46370799-46372773 retained_intron
ENST00000612232 (SLC38A2-201) 46361111-46370789 protein_coding
ENSG00000258096 (RP11-474P2.2)
 ENST00000550319 (RP11-474P2.2-001) 46371463-46373778 antisense
ENSG00000274591 (RP11-474P2.5)
 ENST00000611566 (RP11-474P2.5-001) 46239106-46239473 sense_intronic
CIL_0005YO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023169-ENSMUSG00000022462 CGP 10090 15:96571418-96699698
GeneTranscriptPositionBiotype
ENSMUSG00000022462 (Slc38a2)
solute carrier family 38, member 2 		ENSMUST00000023099 (Slc38a2-201) 96687394-96699698 protein_coding
ENSMUSG00000023169 (Slc38a1)
solute carrier family 38, member 1 		ENSMUST00000088452 (Slc38a1-201) 96571418-96642913 protein_coding
ENSMUST00000088454 (Slc38a1-202) 96571418-96642343 protein_coding
ENSMUST00000100262 (Slc38a1-203) 96571418-96641962 protein_coding
ENSMUSG00000064928 (Gm22045)
predicted gene, 22045 		ENSMUST00000082994 (Gm22045-201) 96671793-96671900 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YO_0001ENSG00000111371ENST00000398637ENST00000439706ENST00000546519ENST00000546893ENST00000548979ENST00000549049ENST00000549633ENST00000550173ENST00000551506ENST00000552197ENST00000612161ENSG00000134294ENST00000256689ENST00000546520ENST00000547252ENST00000548111ENST00000548236ENST00000548785ENST00000548870ENST00000549258ENST00000551374ENST00000551405ENST00000552414ENST00000552703ENST00000553252ENST00000612232ENSG00000258096ENST00000550319ENSG00000274591ENST00000611566CIL_0005YO_0002ENSMUSG00000022462ENSMUST00000023099ENSMUSG00000023169ENSMUST00000088452ENSMUST00000088454ENSMUST00000100262ENSMUSG00000064928ENSMUST00000082994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YO_0001ENSG00000111371ENST00000398637ENST00000439706ENST00000546893ENST00000549049ENST00000552197ENSG00000134294ENST00000256689ENST00000547252ENST00000549258ENST00000551374ENSG00000258096ENST00000550319ENSG00000274591ENST00000611566CIL_0005YO_0002ENSMUSG00000022462ENSMUST00000023099ENSMUSG00000023169ENSMUST00000088452ENSMUST00000088454ENSMUST00000100262ENSMUSG00000064928ENSMUST00000082994
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111371 ENST00000398637 0.898±0.00 4.044±0.00 0.738±0.00 3.799±1.40 1.311±0.69 3.339±0.03 8.549±3.97 1.761±0.00 1.415±0.16 1.663±0.00 8.108±0.00 3.746±2.38 8.213±2.00 1.424±0.00
ENST00000439706 N/A N/A 2.970±0.00 N/A N/A 9.557±0.00 N/A N/A 5.315±0.00 4.130±0.00 N/A 9.525±0.00 N/A N/A
ENST00000546519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546893 N/A N/A N/A 10.875±0.00 7.246±0.00 N/A 7.013±0.00 1.283±0.00 N/A 6.134±0.00 1.475±0.00 N/A N/A N/A
ENST00000548979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549049 N/A N/A N/A N/A 5.868±0.00 N/A N/A N/A N/A N/A 2.088±0.00 N/A N/A N/A
ENST00000549633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00
ENST00000612161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134294 ENST00000256689 37.099±0.00 31.029±0.00 1.237±0.00 10.814±2.21 9.453±4.96 10.891±7.94 18.090±13.30 12.037±2.42 13.573±3.45 16.169±7.83 14.951±12.25 14.810±7.13 22.406±8.89 9.862±1.69
ENST00000546520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.167±0.00 N/A N/A N/A
ENST00000548111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549258 N/A N/A 3.121±0.00 N/A 5.287±0.00 N/A N/A N/A 4.660±0.00 N/A N/A 4.994±0.00 N/A N/A
ENST00000551374 N/A N/A N/A N/A N/A 5.003±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258096 ENST00000550319 0.090±0.00 N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A 0.127±0.00 N/A 1.096±0.00
ENSG00000274591 ENST00000611566 0.085±0.00 0.298±0.00 0.825±0.00 0.286±0.00 0.288±0.00 0.135±0.09 0.204±0.08 0.178±0.00 0.140±0.00 0.751±0.43 N/A 0.298±0.18 0.629±0.00 0.178±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022462 ENSMUST00000023099 14.688±7.42 21.998±8.30 16.163±1.80 16.079±5.80 8.592±5.10 21.942±8.32 21.895±8.40 7.777±4.73 11.426±6.03 9.001±0.74 21.893±7.43 18.063±10.23 38.366±19.87 3.077±1.94
ENSMUSG00000023169 ENSMUST00000088452 3.382±3.18 1.387±0.62 2.978±0.03 13.603±3.00 5.066±2.10 5.197±0.43 1.146±0.08 0.428±0.13 1.842±1.81 3.251±0.55 0.440±0.24 11.919±3.65 3.690±0.12 0.310±0.11
ENSMUST00000088454 3.060±1.99 1.529±0.00 2.637±0.37 7.664±1.43 2.643±2.21 4.493±1.32 1.270±0.52 0.672±0.16 0.970±0.87 1.470±0.29 0.090±0.01 4.865±2.97 26.322±9.62 0.227±0.15
ENSMUST00000100262 2.847±0.04 1.041±0.30 0.943±0.12 3.902±0.99 1.583±0.52 2.110±0.18 0.388±0.06 0.221±0.02 0.537±0.32 0.874±0.14 N/A 3.210±0.67 5.386±0.47 0.104±0.03
ENSMUSG00000064928 ENSMUST00000082994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.984±0.00 N/A

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