C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: grainyhead-like 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134317 GRHL1 9606 + 2:9951693-10002277 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324907 GRHL1-001 9951698-10002277 protein_coding
  ENST00000405379 GRHL1-201 9961165-10001205 protein_coding
  ENST00000439493 GRHL1-004 9951693-9961082 nonsense_mediated_decay
  ENST00000464418 GRHL1-003 9951693-10000731 nonsense_mediated_decay
  ENST00000472167 GRHL1-006 9951782-10000832 nonsense_mediated_decay
  ENST00000480736 GRHL1-005 9995306-10000866 protein_coding
  ENST00000494520 GRHL1-007 9960964-9964307 retained_intron
  ENST00000497403 GRHL1-002 9951693-9966401 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324907ENST00000405379ENST00000439493ENST00000464418ENST00000472167ENST00000480736ENST00000497403
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324907 0.409±0.00 0.236±0.00 N/A 0.854±0.00 N/A 0.014±0.00 0.507±0.19 1.323±0.00 N/A 0.153±0.00 0.431±0.20 5.005±0.96 0.101±0.00
ENST00000405379 N/A N/A 0.466±0.00 0.723±0.38 0.186±0.02 N/A N/A 0.735±0.00 N/A N/A 1.147±0.54 1.359±0.00 0.883±0.00
ENST00000439493 N/A N/A N/A 1.019±0.00 N/A N/A 1.023±0.00 N/A N/A N/A N/A N/A N/A
ENST00000464418 N/A 0.130±0.00 0.085±0.00 N/A N/A N/A N/A N/A 0.934±0.15 N/A N/A N/A 0.303±0.00
ENST00000472167 N/A N/A N/A N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.683±0.00 1.295±0.00 N/A
ENST00000480736 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.160±0.00 N/A N/A N/A
ENST00000497403 0.066±0.00 0.110±0.00 0.028±0.00 N/A N/A 0.018±0.01 N/A 0.293±0.00 N/A 0.011±0.00 0.025±0.00 N/A 0.084±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MN CIL_0001MN_0001 CGP 2:9843354-10002277
CIL_0007DG CIL_0007DG_0001 CGP 2:9951693-10054836

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061391 grhl1 grainyhead-like 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000020656 Grhl1 grainyhead-like 1 (Drosophila) protein_coding Mus_musculus

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