C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, CCHC domain containing 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134744 ZCCHC11 9606 - 1:52408282-52553487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257177 ZCCHC11-005 52423275-52552982 protein_coding
  ENST00000355809 ZCCHC11-003 52514778-52552994 protein_coding
  ENST00000371541 ZCCHC11-002 52462178-52525930 processed_transcript
  ENST00000371544 ZCCHC11-001 52423275-52553100 protein_coding
  ENST00000466440 ZCCHC11-006 52423403-52434670 retained_intron
  ENST00000469810 ZCCHC11-004 52433089-52462912 retained_intron
  ENST00000470212 ZCCHC11-008 52431288-52437255 retained_intron
  ENST00000470626 ZCCHC11-013 52526020-52553085 protein_coding
  ENST00000471623 ZCCHC11-015 52423636-52431081 protein_coding
  ENST00000473856 ZCCHC11-014 52477738-52553069 nonsense_mediated_decay
  ENST00000474453 ZCCHC11-016 52431247-52446650 protein_coding
  ENST00000481133 ZCCHC11-011 52464963-52468490 retained_intron
  ENST00000481528 ZCCHC11-009 52460957-52461716 retained_intron
  ENST00000484723 ZCCHC11-017 52446400-52553458 protein_coding
  ENST00000494469 ZCCHC11-007 52423563-52431438 protein_coding
  ENST00000497120 ZCCHC11-010 52446265-52462090 retained_intron
  ENST00000524582 ZCCHC11-018 52526050-52553487 protein_coding
  ENST00000527941 ZCCHC11-020 52408285-52431112 nonsense_mediated_decay
  ENST00000528457 ZCCHC11-021 52408282-52431227 protein_coding
  ENST00000528642 ZCCHC11-012 52445787-52553082 protein_coding
  ENST00000531722 ZCCHC11-019 52431126-52446628 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257177ENST00000371541ENST00000371544ENST00000473856ENST00000474453ENST00000484723ENST00000494469ENST00000528642ENST00000531722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257177 N/A 1.593±0.00 0.838±0.00 1.071±0.23 0.748±0.00 0.876±0.18 0.885±0.30 1.193±0.00 N/A 0.852±0.00 N/A 2.038±1.15 1.080±0.36 1.959±0.13
ENST00000371541 0.625±0.00 N/A N/A N/A N/A N/A 0.775±0.00 1.059±0.00 2.094±0.00 1.771±0.00 N/A N/A N/A 3.080±0.00
ENST00000371544 0.965±0.00 2.001±0.00 N/A 0.601±0.00 N/A N/A N/A 1.167±0.21 0.722±0.00 0.832±0.00 2.449±0.71 2.896±0.00 0.662±0.22 1.153±0.20
ENST00000473856 N/A N/A N/A 1.743±0.00 2.292±0.00 2.351±0.00 N/A 4.229±0.00 5.902±0.00 3.492±0.00 N/A 3.532±0.00 N/A N/A
ENST00000474453 3.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.575±0.07 3.885±0.85 12.308±0.00
ENST00000484723 N/A N/A N/A 1.494±0.00 1.318±0.00 1.300±0.21 2.166±0.00 N/A 0.847±0.00 1.437±0.00 3.375±1.73 1.766±0.00 1.636±0.00 2.657±0.69
ENST00000494469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.783±0.00 N/A N/A
ENST00000528642 0.844±0.00 N/A 2.146±0.00 1.873±0.00 1.674±0.68 1.822±0.00 1.735±0.36 1.321±0.00 3.386±0.00 3.252±0.00 N/A 4.771±0.00 0.620±0.00 1.951±0.00
ENST00000531722 N/A N/A N/A 4.885±0.00 N/A 3.388±0.00 N/A 6.291±0.00 3.020±0.00 5.832±0.00 N/A N/A N/A 9.557±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001816 IEA cytokine production
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0010586 ISS miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0019827 IMP stem cell maintenance
GO:0031054 IMP pre-miRNA processing
GO:0031123 IDA RNA 3'-end processing
GO:0031664 IEA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0032755 IEA positive regulation of interleukin-6 production
GO:0044822 IDA poly(A) RNA binding
GO:0050265 IDA RNA uridylyltransferase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070102 IEA interleukin-6-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070271 zcchc11 zinc finger, CCHC domain containing 11 protein_coding Danio_rerio
ENSMUSG00000034610 Zcchc11 zinc finger, CCHC domain containing 11 protein_coding Mus_musculus

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