C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, CCHC domain containing 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257177 ZCCHC11-005 ENSG00000134744 9606 - 1:52423275-52552982 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000257177
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000257177 1.593±0.00 0.838±0.00 1.071±0.23 0.748±0.00 0.876±0.18 0.885±0.30 1.193±0.00 0.852±0.00 2.038±1.15 1.080±0.36 1.959±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IEA cytokine production
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010586 ISS miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0019827 IMP stem cell maintenance
GO:0031054 IMP pre-miRNA processing
GO:0031123 IDA RNA 3'-end processing
GO:0031664 IEA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0032755 IEA positive regulation of interleukin-6 production
GO:0044822 IDA poly(A) RNA binding
GO:0050265 IDA RNA uridylyltransferase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070102 IEA interleukin-6-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097925 Zcchc11-001 protein_coding Mus_musculus 0 4586
ENSMUST00000043368 Zcchc11-201 protein_coding Mus_musculus 0 4490
ENSMUST00000155068 Zcchc11-004 protein_coding Mus_musculus 0 3219
ENSMUST00000145590 Zcchc11-003 processed_transcript Mus_musculus 0 946
ENSMUST00000128042 Zcchc11-002 protein_coding Mus_musculus 0 656
ENSMUST00000151349 Zcchc11-009 processed_transcript Mus_musculus 0 575
ENSMUST00000127602 Zcchc11-010 processed_transcript Mus_musculus 0 342
ENSMUST00000106673 Zcchc11-005 protein_coding Mus_musculus 0 324
ENSMUST00000138809 Zcchc11-006 processed_transcript Mus_musculus 0 298
ENSMUST00000153916 Zcchc11-007 processed_transcript Mus_musculus 0 296
ENSMUST00000138088 Zcchc11-008 processed_transcript Mus_musculus 3e-25 122

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