C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, CCHC domain containing 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034610 Zcchc11 10090 + 4:108459426-108559421 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043368 Zcchc11-201 108459426-108559415 protein_coding
  ENSMUST00000097925 Zcchc11-001 108460010-108559421 protein_coding
  ENSMUST00000106673 Zcchc11-005 108459426-108479153 protein_coding
  ENSMUST00000127602 Zcchc11-010 108549085-108555435 processed_transcript
  ENSMUST00000128042 Zcchc11-002 108555736-108559054 protein_coding
  ENSMUST00000138088 Zcchc11-008 108542418-108543226 processed_transcript
  ENSMUST00000138809 Zcchc11-006 108526474-108529306 processed_transcript
  ENSMUST00000145590 Zcchc11-003 108555452-108559415 processed_transcript
  ENSMUST00000151349 Zcchc11-009 108542266-108548286 processed_transcript
  ENSMUST00000153916 Zcchc11-007 108542365-108543233 processed_transcript
  ENSMUST00000155068 Zcchc11-004 108479081-108524350 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043368ENSMUST00000097925ENSMUST00000106673ENSMUST00000128042ENSMUST00000145590ENSMUST00000151349ENSMUST00000155068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043368 2.173±1.12 N/A 1.835±0.69 11.216±6.65 2.234±0.00 N/A 1.668±0.23 1.145±0.00 4.566±0.72 1.603±0.00 1.745±0.38 13.240±1.29 7.695±1.47 1.794±0.33
ENSMUST00000097925 2.409±1.34 2.666±0.54 1.131±0.15 9.858±1.74 3.667±1.88 1.750±0.43 1.190±0.43 1.302±0.33 2.025±0.50 3.134±0.97 0.600±0.20 7.726±2.30 4.057±1.11 3.628±1.25
ENSMUST00000106673 N/A N/A N/A N/A N/A 2.909±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128042 7.022±0.00 N/A 11.059±1.07 35.063±0.00 6.984±0.00 N/A 5.528±1.28 5.908±0.58 14.265±6.26 N/A N/A N/A N/A 12.151±2.31
ENSMUST00000145590 N/A 8.902±5.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.882±13.31 N/A N/A
ENSMUST00000151349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 69.042±0.00 N/A 22.867±0.00
ENSMUST00000155068 N/A N/A N/A 1.485±0.00 N/A N/A N/A N/A N/A N/A N/A 6.912±1.56 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VF CIL_0001VF_0002 CGP 4:108400390-108559421

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA:ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010586 IMP miRNA metabolic process
GO:0010587 ISS miRNA catabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0019827 ISS stem cell maintenance
GO:0031054 ISS pre-miRNA processing
GO:0031123 IDA RNA 3'-end processing
GO:0031664 IDA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0032755 IMP positive regulation of interleukin-6 production
GO:0044822 IEA poly(A) RNA binding
GO:0050265 IDA RNA uridylyltransferase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070102 IMP interleukin-6-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070271 zcchc11 zinc finger, CCHC domain containing 11 protein_coding Danio_rerio
ENSG00000134744 ZCCHC11 zinc finger, CCHC domain containing 11 protein_coding Homo_sapiens

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