C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11 family interacting protein 5 (class I)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135631 RAB11FIP5 9606 - 2:73073382-73156721 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258098 RAB11FIP5-001 73073382-73113018 protein_coding
  ENST00000475951 RAB11FIP5-007 73088942-73156721 processed_transcript
  ENST00000479196 RAB11FIP5-005 73081204-73088328 processed_transcript
  ENST00000482554 RAB11FIP5-003 73073384-73084396 processed_transcript
  ENST00000486777 RAB11FIP5-004 73073382-73080211 processed_transcript
  ENST00000493523 RAB11FIP5-002 73073384-73089655 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258098ENST00000482554ENST00000486777ENST00000493523
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258098 9.232±0.00 8.540±0.00 2.586±0.00 10.471±5.66 3.987±2.82 3.247±1.74 3.282±3.15 13.164±0.00 2.019±0.00 11.950±0.00 5.152±4.73 5.973±3.53 2.873±0.56 N/A
ENST00000482554 N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000486777 5.347±0.00 7.215±0.00 N/A 10.355±0.00 4.445±0.00 4.434±0.00 4.024±0.00 10.848±0.00 N/A 4.123±2.33 3.230±0.00 7.237±0.85 3.291±0.29 32.931±4.37
ENST00000493523 N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0001 VISTA 2:72597601-73198962
CIL_0008RW CIL_0008RW_0001 VISTA 2:72647671-73248640
CIL_0002DU CIL_0002DU_0002 CGP 2:72916260-73075619
CIL_0002DT CIL_0002DT_0002 CGP 2:72942036-73156721
CIL_0003EE CIL_0003EE_0001 CGP 2:73073382-73212513

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005739 IEA mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0005769 ISS early endosome
GO:0005794 ISS Golgi apparatus
GO:0005815 IDA microtubule organizing center
GO:0015031 IEA protein transport
GO:0030141 ISS secretory granule
GO:0035773 ISS insulin secretion involved in cellular response to glucose stimulus
GO:0043015 IDA gamma-tubulin binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045055 ISS regulated secretory pathway
GO:0055037 ISS recycling endosome
GO:0071468 IDA cellular response to acidic pH
GO:2000008 IMP regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088248 RAB11FIP5 (1 of 2) RAB11 family interacting protein 5 (class I) protein_coding Danio_rerio
ENSDARG00000094510 rab11fip5a RAB11 family interacting protein 5a (class I) protein_coding Danio_rerio
ENSMUSG00000051343 Rab11fip5 RAB11 family interacting protein 5 (class I) protein_coding Mus_musculus

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