C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 5 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258098 RAB11FIP5-001 ENSG00000135631 9606 - 2:73073382-73113018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000258098
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000258098 9.232±0.00 8.540±0.00 2.586±0.00 10.471±5.66 3.987±2.82 3.247±1.74 3.282±3.15 13.164±0.00 2.019±0.00 11.950±0.00 5.152±4.73 5.973±3.53 2.873±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0001 VISTA 2:72597601-73198962
CIL_0008RW CIL_0008RW_0001 VISTA 2:72647671-73248640
CIL_0002DU CIL_0002DU_0002 CGP 2:72916260-73075619
CIL_0002DT CIL_0002DT_0002 CGP 2:72942036-73156721
CIL_0003EE CIL_0003EE_0001 CGP 2:73073382-73212513

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005739 IEA mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0005769 ISS early endosome
GO:0005794 ISS Golgi apparatus
GO:0005815 IDA microtubule organizing center
GO:0015031 IEA protein transport
GO:0030141 ISS secretory granule
GO:0035773 ISS insulin secretion involved in cellular response to glucose stimulus
GO:0043015 IDA gamma-tubulin binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045055 ISS regulated secretory pathway
GO:0055037 ISS recycling endosome
GO:0071468 IDA cellular response to acidic pH
GO:2000008 IMP regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060837 Rab11fip5-201 protein_coding Mus_musculus 0 1962

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