C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: formin homology 2 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135723 FHOD1 9606 - 16:67229387-67247658 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258201 FHOD1-001 67229389-67247658 protein_coding
  ENST00000561922 FHOD1-003 67233681-67247478 nonsense_mediated_decay
  ENST00000562266 FHOD1-009 67234180-67234754 retained_intron
  ENST00000566006 FHOD1-008 67230314-67231080 retained_intron
  ENST00000567509 FHOD1-007 67231450-67233761 nonsense_mediated_decay
  ENST00000567561 FHOD1-006 67230329-67232058 nonsense_mediated_decay
  ENST00000567752 FHOD1-002 67229391-67247464 retained_intron
  ENST00000568595 FHOD1-005 67233948-67236616 nonsense_mediated_decay
  ENST00000569085 FHOD1-010 67229387-67230196 retained_intron
  ENST00000569888 FHOD1-011 67231790-67234031 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258201ENST00000561922ENST00000566006ENST00000567509ENST00000567561ENST00000567752ENST00000568595ENST00000569085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258201 4.813±0.00 5.977±0.00 0.218±0.00 N/A 4.424±3.77 2.313±0.00 0.679±0.64 3.139±2.93 1.282±0.00 5.120±4.15 19.222±13.98 13.117±13.12 10.570±0.77 3.615±0.48
ENST00000561922 N/A N/A N/A N/A N/A N/A 0.137±0.00 0.363±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566006 N/A N/A N/A N/A N/A 2.906±0.00 0.437±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567509 N/A N/A N/A N/A N/A N/A N/A 1.459±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567561 N/A N/A N/A N/A 2.534±0.00 3.275±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567752 N/A N/A 0.158±0.00 N/A N/A N/A N/A N/A 0.744±0.00 3.263±0.00 N/A 2.006±0.00 N/A N/A
ENST00000568595 N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A N/A N/A N/A N/A N/A
ENST00000569085 5.571±0.00 14.452±0.00 N/A 3.573±0.00 11.974±0.00 3.651±0.00 2.614±0.00 5.603±4.63 N/A 13.606±0.00 N/A 8.899±0.00 N/A 6.437±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K2 CIL_0005K2_0001 CGP 16:67227103-67247658
CIL_0003M0 CIL_0003M0_0002 CGP 16:67229387-67272190

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016020 IDA membrane
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051496 IDA positive regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051768 FHOD1 formin homology 2 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000014778 Fhod1 formin homology 2 domain containing 1 protein_coding Mus_musculus

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