C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: formin homology 2 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014778 Fhod1 10090 - 8:105329163-105347953 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014922 Fhod1-001 105329163-105347953 protein_coding
  ENSMUST00000132777 Fhod1-002 105329163-105347909 retained_intron
  ENSMUST00000134837 Fhod1-004 105330940-105331566 retained_intron
  ENSMUST00000136439 Fhod1-003 105336553-105337907 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014922ENSMUST00000132777ENSMUST00000134837
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014922 9.525±3.35 3.571±0.83 4.326±1.10 1.268±0.06 6.693±2.68 11.864±2.15 3.111±0.76 5.512±1.22 2.593±0.98 27.138±2.54 7.481±1.43 5.684±1.13 15.105±7.88 6.096±1.97
ENSMUST00000132777 3.015±0.44 1.689±0.00 2.747±0.21 1.153±0.04 2.835±0.35 4.024±0.54 1.342±0.19 2.308±0.16 N/A 8.774±1.05 2.066±0.23 2.251±0.52 5.909±0.00 N/A
ENSMUST00000134837 N/A N/A N/A N/A 11.750±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K1 CIL_0005K1_0002 CGP 8:105312341-105335219
CIL_0005K2 CIL_0005K2_0002 CGP 8:105326354-105347953
CIL_0003M0 CIL_0003M0_0003 CGP 8:105329163-105369881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding
GO:0042995 IEA cell projection
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051496 IEA positive regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051768 FHOD1 formin homology 2 domain containing 1 protein_coding Danio_rerio
ENSG00000135723 FHOD1 formin homology 2 domain containing 1 protein_coding Homo_sapiens

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