C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin homology 2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258201 FHOD1-001 ENSG00000135723 9606 - 16:67229389-67247658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258201
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258201 4.813±0.00 5.977±0.00 0.218±0.00 4.424±3.77 2.313±0.00 0.679±0.64 3.139±2.93 1.282±0.00 5.120±4.15 19.222±13.98 13.117±13.12 10.570±0.77 3.615±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K2 CIL_0005K2_0001 CGP 16:67227103-67247658
CIL_0003M0 CIL_0003M0_0002 CGP 16:67229387-67272190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016020 IDA membrane
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051496 IDA positive regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014922 Fhod1-001 protein_coding Mus_musculus 0 1938
ENSMUST00000132777 Fhod1-002 retained_intron Mus_musculus 0 1570
ENSMUST00000136439 Fhod1-003 retained_intron Mus_musculus 0 468
ENSMUST00000134837 Fhod1-004 retained_intron Mus_musculus 0 383
ENSMUST00000098453 Tmem208-003 protein_coding Mus_musculus 2e-20 106
ENSMUST00000109372 Tmem208-005 nonsense_mediated_decay Mus_musculus 3e-19 102

Loading