C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135823 STX6 9606 - 1:180972712-181023121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258301 STX6-001 180972725-181022911 protein_coding
  ENST00000469135 STX6-002 180973039-180989377 processed_transcript
  ENST00000496476 STX6-003 180987725-180988301 processed_transcript
  ENST00000542060 STX6-201 180972712-181023121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258301ENST00000469135ENST00000542060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258301 8.576±0.00 6.265±0.00 1.052±0.00 7.827±0.74 5.640±2.85 4.807±1.74 1.431±0.82 2.684±2.21 1.879±1.04 5.332±1.78 2.010±0.00 7.050±2.15 5.951±0.96 5.171±0.11
ENST00000469135 N/A N/A 0.777±0.00 N/A 1.449±0.00 0.924±0.00 0.466±0.00 0.384±0.00 1.223±0.00 1.059±0.06 0.457±0.00 3.279±0.00 N/A N/A
ENST00000542060 N/A N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 1.008±0.00 N/A N/A N/A 1.770±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0001 VISTA 1:180851913-181454518
CIL_0001WA CIL_0001WA_0002 CGP 1:180913154-181023121

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IBA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005769 IDA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005886 TAS plasma membrane
GO:0006886 IBA intracellular protein transport
GO:0006906 IPI vesicle fusion
GO:0007032 IEA endosome organization
GO:0016020 IEA membrane
GO:0016021 IBA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030136 TAS clathrin-coated vesicle
GO:0031201 IDA SNARE complex
GO:0032588 ISS trans-Golgi network membrane
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0048193 IEA Golgi vesicle transport
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042742 stx6 syntaxin 6 protein_coding Danio_rerio
ENSMUSG00000026470 Stx6 syntaxin 6 protein_coding Mus_musculus

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