C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258301 STX6-001 ENSG00000135823 9606 - 1:180972725-181022911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258301
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258301 8.576±0.00 6.265±0.00 1.052±0.00 7.827±0.74 5.640±2.85 4.807±1.74 1.431±0.82 2.684±2.21 1.879±1.04 5.332±1.78 2.010±0.00 7.050±2.15 5.951±0.96 5.171±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0001 VISTA 1:180851913-181454518
CIL_0001WA CIL_0001WA_0002 CGP 1:180913154-181023121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IBA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005769 IDA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005886 TAS plasma membrane
GO:0006886 IBA intracellular protein transport
GO:0006906 IPI vesicle fusion
GO:0007032 IEA endosome organization
GO:0016020 IEA membrane
GO:0016021 IBA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030136 TAS clathrin-coated vesicle
GO:0031201 IDA SNARE complex
GO:0032588 ISS trans-Golgi network membrane
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0048193 IEA Golgi vesicle transport
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027743 Stx6-201 protein_coding Mus_musculus 0 1051

Loading