C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SCY1-like 2 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136021 SCYL2 9606 + 12:100267140-100341724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360820 SCYL2-001 100267384-100341724 protein_coding
  ENST00000547202 SCYL2-011 100333647-100337497 retained_intron
  ENST00000547735 SCYL2-010 100335591-100338633 retained_intron
  ENST00000548392 SCYL2-004 100267177-100312548 protein_coding
  ENST00000548871 SCYL2-009 100323598-100334251 nonsense_mediated_decay
  ENST00000549486 SCYL2-005 100283132-100291989 retained_intron
  ENST00000549687 SCYL2-002 100267140-100337404 protein_coding
  ENST00000550067 SCYL2-006 100267249-100296807 processed_transcript
  ENST00000550251 SCYL2-008 100315557-100326645 nonsense_mediated_decay
  ENST00000553148 SCYL2-007 100317715-100323836 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360820ENST00000547202ENST00000549687
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360820 3.272±0.00 1.177±0.00 3.259±0.00 1.271±0.00 4.169±0.59 3.988±1.63 1.622±0.93 5.635±0.96 3.221±0.28 3.166±1.14 0.527±0.16 1.776±0.92 2.313±0.58 2.379±0.00
ENST00000547202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.851±0.00
ENST00000549687 N/A N/A N/A N/A N/A 4.321±0.00 N/A N/A N/A 1.837±0.00 N/A 3.460±0.00 N/A 1.654±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016J CIL_00016J_0002 CGP 12:100203669-100341724

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002092 IDA positive regulation of receptor internalization
GO:0004672 IEA protein kinase activity
GO:0005102 IPI receptor binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0006468 IEA protein phosphorylation
GO:0008333 IDA endosome to lysosome transport
GO:0016020 IEA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031410 IEA cytoplasmic vesicle
GO:0090090 IDA negative regulation of canonical Wnt signaling pathway
GO:2000286 IDA receptor internalization involved in canonical Wnt signaling pathway
GO:2000370 IDA positive regulation of clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032627 SCYL2 SCY1-like 2 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000069539 Scyl2 SCY1-like 2 (S. cerevisiae) protein_coding Mus_musculus

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