C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin-dependent kinase 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136807 CDK9 9606 + 9:127785679-127790787 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373264 CDK9-001 127786049-127790787 protein_coding
  ENST00000421939 CDK9-005 127785679-127787575 protein_coding
  ENST00000480353 CDK9-002 127786074-127788412 processed_transcript
  ENST00000491521 CDK9-003 127787500-127788605 processed_transcript
  ENST00000498339 CDK9-004 127788422-127789364 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373264ENST00000480353ENST00000491521ENST00000498339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373264 14.199±0.00 21.095±0.00 3.003±0.00 5.835±3.91 7.877±5.71 3.802±1.27 4.130±3.36 6.397±2.76 8.794±4.67 4.767±0.56 1.746±0.26 19.716±13.15 5.853±2.33 16.323±7.34
ENST00000480353 17.329±0.00 21.202±0.00 N/A 7.682±0.00 11.298±0.00 N/A 5.917±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000491521 N/A N/A N/A N/A N/A N/A 1.902±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000498339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.419±0.00 18.503±0.00 37.511±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003682 IEA chromatin binding
GO:0004672 TAS:IEA protein kinase activity
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006282 IDA regulation of DNA repair
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006468 IDA:IEA protein phosphorylation
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008023 IDA transcription elongation factor complex
GO:0008024 IDA positive transcription elongation factor complex b
GO:0008283 TAS cell proliferation
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016605 IDA PML body
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0017069 IEA snRNA binding
GO:0031056 IDA regulation of histone modification
GO:0043111 IDA replication fork arrest
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0071157 IDA negative regulation of cell cycle arrest
GO:0071345 IDA cellular response to cytokine stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044811 cdk9 cyclin-dependent kinase 9 (CDC2-related kinase) protein_coding Danio_rerio
ENSMUSG00000009555 Cdk9 cyclin-dependent kinase 9 (CDC2-related kinase) protein_coding Mus_musculus

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