C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373264 CDK9-001 ENSG00000136807 9606 + 9:127786049-127790787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373264
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373264 14.199±0.00 21.095±0.00 3.003±0.00 5.835±3.91 7.877±5.71 3.802±1.27 4.130±3.36 6.397±2.76 8.794±4.67 4.767±0.56 1.746±0.26 19.716±13.15 5.853±2.33 16.323±7.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003682 IEA chromatin binding
GO:0004672 TAS:IEA protein kinase activity
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006282 IDA regulation of DNA repair
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006468 IDA:IEA protein phosphorylation
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008023 IDA transcription elongation factor complex
GO:0008024 IDA positive transcription elongation factor complex b
GO:0008283 TAS cell proliferation
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016605 IDA PML body
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0017069 IEA snRNA binding
GO:0031056 IDA regulation of histone modification
GO:0043111 IDA replication fork arrest
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0071157 IDA negative regulation of cell cycle arrest
GO:0071345 IDA cellular response to cytokine stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009699 Cdk9-001 protein_coding Mus_musculus 0 1480
ENSMUST00000120105 Cdk9-002 protein_coding Mus_musculus 0 1304
ENSMUST00000125058 Cdk9-005 retained_intron Mus_musculus 0 1221
ENSDART00000065859 cdk9-001 protein_coding Danio_rerio 0 804
ENSMUST00000123170 Cdk9-006 nonsense_mediated_decay Mus_musculus 0 673
ENSMUST00000130399 Cdk9-009 processed_transcript Mus_musculus 0 438
ENSMUST00000144210 Cdk9-007 processed_transcript Mus_musculus 3e-26 124

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